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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Neem_12947_f_2 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family |
BBR-BPC |
| Protein Properties |
Length: 304aa MW: 33767.8 Da PI: 9.9947 |
| Description |
BBR-BPC family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 356.8 | 4.5e-109 | 14 | 304 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82
mddd+ + rn+gyyep+ +k +lglqlmss+a+rd+k r+ n+ +++ ++a+++rd m++ +rd+++++ ++k+l
Neem_12947_f_2 14 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMADRDTKAflpgRDPNI-MISANGAFHPRDcvvseasipMNY-MRDSWISQ--------RDKFL 96
9***9999*******99..*****************************.************************.9*******........789** PP
GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlse...pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174
++l+++ +++vl++t+ ++slq+l+ + +d ++ r + p +e++ +++e +++kkrq + k++kakk+kk +
Neem_12947_f_2 97 NMLPANP--------TYGVLPETSGAHSLQMLQPpptTSRDDRLAPERVPAPDRVVPRVEEPVVKTEGAQVKKRQGGGASKTPKAKKAKK----P 179
****554........599*************77755433334444456666667777788889999999999999999999999999999....3 PP
GAGA_bind 175 kkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269
k+++ ++ +r+k kks+d+v+ng+++D+s++P+PvCsCtG+ +qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+L
Neem_12947_f_2 180 KDNNGTAV--QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGTAQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVL 272
34444444..689********************************************************************************** PP
GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
ekLaaeGy+++np+DL++hWA+HGtnkfvtir
Neem_12947_f_2 273 EKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 304
*******************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MWEMGKEFES EIFMDDDALN MRNWGYYEPS FKGHLGLQLM SSMADRDTKA FLPGRDPNIM 60
ISANGAFHPR DCVVSEASIP MNYMRDSWIS QRDKFLNMLP ANPTYGVLPE TSGAHSLQML 120
QPPPTTSRDD RLAPERVPAP DRVVPRVEEP VVKTEGAQVK KRQGGGASKT PKAKKAKKPK 180
DNNGTAVQRV KPAKKSMDVV INGIDMDISG IPIPVCSCTG TAQQCYRWGC GGWQSACCTT 240
NVSMYPLPMS TKRRGARIAG RKMSQGAFKK VLEKLAAEGY NFANPIDLRT HWARHGTNKF 300
VTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
