PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_12682_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 239aa    MW: 26731.8 Da    PI: 4.3396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_12682_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++++G  +W+  ++  g+ R++k+c++rw +yl
   Neem_12682_f_1 14 KGSWTPEEDRKLIAYIRRYGIWNWTEMPKAAGLLRCGKSCRLRWVNYL 61
                     799*****************99**********99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22764IPR009057Homeodomain-like
PROSITE profilePS5129420.361965IPR017930Myb domain
SMARTSM007171.2E-111363IPR001005SANT/Myb domain
PfamPF002494.8E-131461IPR001005SANT/Myb domain
SuperFamilySSF466891.49E-221588IPR009057Homeodomain-like
CDDcd001671.83E-101661No hitNo description
PROSITE profilePS500904.2866286IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-96588IPR009057Homeodomain-like
SMARTSM007176.866184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVRAVGCENT SVRKGSWTPE EDRKLIAYIR RYGIWNWTEM PKAAGLLRCG KSCRLRWVNY  60
LKPGIKRGNF SEEEDEIIMK LHELLGNRIV PSNIVEHDKI NPPEPDFLLP NNNSPIASNI  120
DGCNSSTPTS PQLSTCTDNF SSSSSSSCGS AGEIFENLTL EYQNSGSSET YGELQSFWEQ  180
PFMMEDLCMM DGYGTTHTDP GFMVSTSLWG HENGIFPSSA SCYEAEDDLL AYSFDAWIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-18141217109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449185.21e-68myb-related protein 308
TrEMBLA0A2H5N2692e-64A0A2H5N269_CITUN; Uncharacterized protein
STRINGXP_006467925.15e-65(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-37myb domain protein 4