PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_12499_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 222aa MW: 24244.8 Da PI: 5.1588

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_12499_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.2	1.4e-08	105	126	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ + G C yG++C+F+H Neem_12499_f_1 105 EKICKSYVT-GSCTYGSKCRFIH 126 578999999.************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.521	102	129	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-6	102	127	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-4	102	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.6E-6	105	126	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-7	106	127	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MAKRRSGSGS LSPLMRKYLT SNSNSNSSSN SSSPLSRMSS NCNSPLSAVD EEYVFVMDGI 60 LVSNDDFCRS SEEFGNSRFG TKSQLAYGKD ELRSTRPIGK NKSEEKICKS YVTGSCTYGS 120 KCRFIHQDQI MTDSALVLNT AKMDSEGSVN TSKNSNTFKP ELNGEDNWSP EDDGIEVTLP 180 TKPPGTNSPA SREEANESIE NVLYGPTAAK KRLPVFTEIC PE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006493280.1	6e-51	mRNA decay activator protein ZFP36-like isoform X1
TrEMBL	A0A2H5QGT9	1e-47	A0A2H5QGT9_CITUN; Uncharacterized protein
STRING	XP_006493280.1	2e-50	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15770	8	15