PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_12411_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 328aa MW: 38020.2 Da PI: 5.3101

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_12411_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.2	5e-47	12	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 ppG+rF+P d elvv+yL+kkv++++l+ + ikev++yk++P++L +++k +kewyfF++rd+ky++gkr+nra+++gyWkatg dk+v Neem_12411_f_2 12 PPGYRFKPYDPELVVCYLQKKVKNEPLPQ-NRIKEVELYKFNPETLTERYKPlCDKEWYFFTPRDRKYKNGKRPNRAAADGYWKATGADKSVQY- 104 9***********************999.77**********9544434789*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg kktLvfy+g+ pkg kt+W+mhe+r+ Neem_12411_f_2 105 NDAVVGFKKTLVFYRGKPPKGDKTNWIMHEFRV 137 999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-53	10	163	IPR003441	NAC domain
PROSITE profile	PS51005	53.589	11	163	IPR003441	NAC domain
Pfam	PF02365	7.6E-25	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDVDSYFDDY FPPGYRFKPY DPELVVCYLQ KKVKNEPLPQ NRIKEVELYK FNPETLTERY 60 KPLCDKEWYF FTPRDRKYKN GKRPNRAAAD GYWKATGADK SVQYNDAVVG FKKTLVFYRG 120 KPPKGDKTNW IMHEFRVNTP PRVRGSGDDM RLDDWVLCRI YKKKEKDRSR RSSTGPDDDS 180 LQDDQESESE YQDNGVTDVA PENYMPQDPG FINMSGYVNQ GRFFNPYDDN AFMYTPSAFH 240 NHIGRLPEGI PQYNSNYNPG LNSVWLPRPS STWVQQPFSA SDQNLDLAES SEAAAAAASG 300 ATSQPMESNM KLEQIKEYHL ADQYWDVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-53	11	164	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-53	11	164	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-53	11	164	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-53	11	164	17	166	NO APICAL MERISTEM PROTEIN
4dul_A	7e-53	11	164	17	166	NAC domain-containing protein 19
4dul_B	7e-53	11	164	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321). {ECO:0000269\|PubMed:17124321}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453417.1	1e-105	NAC transcription factor 25
Swissprot	A0SPJ4	1e-58	NAMB1_TRIDC; NAC transcription factor NAM-B1
TrEMBL	A0A2H5P7Q7	1e-105	A0A2H5P7Q7_CITUN; Uncharacterized protein
STRING	XP_006474630.1	1e-105	(Citrus sinensis)
STRING	XP_006453410.1	1e-105	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17542	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	6e-56	NAC domain containing protein 47

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]