PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1220_f_7

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

DBB

Protein Properties

Length: 203aa MW: 22242 Da PI: 5.2725

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1220_f_7	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.6	9.6e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ e+ C ++ lC +C +++H H++v+l Neem_1220_f_7 4 QCEVCEKAEAVVLCCADEAVLCSKCDDKIHAAnklsqkHQRVSL 47 7*****************************66789999998875 PP
2	zf-B_box	27.8	5.1e-09	63	95	2	34
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + + C+ ++e + +fC +++ lC++C +++H Neem_1220_f_7 63 QLPLCDICQERNGYFFCLEDRAILCRQCNMSIH 95 7899****99******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.712	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.84E-6	3	47	No hit	No description
SMART	SM00336	2.0E-7	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.527	62	109	IPR000315	B-box-type zinc finger
SMART	SM00336	2.0E-13	62	109	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.5E-7	63	96	IPR000315	B-box-type zinc finger
CDD	cd00021	1.54E-7	67	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MKIQCEVCEK AEAVVLCCAD EAVLCSKCDD KIHAANKLSQ KHQRVSLLKQ NTASSSSSLP 60 SSQLPLCDIC QERNGYFFCL EDRAILCRQC NMSIHMVNPF LSSHQRFLIA GIKVSLESST 120 NNTESTCMPG GFSTATDTGK ESREAISNMD VRANFTETAT SGSRSGSAPN LATAASSWQL 180 DDILGTHDFN YYEFSDMESP RIN

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006478357.1	1e-75	B-box zinc finger protein 23-like
Swissprot	Q9SYM2	2e-51	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	V4VQ44	6e-75	V4VQ44_9ROSI; Uncharacterized protein
STRING	XP_006441859.1	1e-75	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12502	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	8e-49	light-regulated zinc finger protein 1