PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_12032_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SBP

Protein Properties

Length: 796aa MW: 88292.4 Da PI: 7.2197

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_12032_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.4e-41	59	136	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Neem_12032_f_1 59 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 136 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-32	56	121	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.129	57	134	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.76E-38	58	139	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.2E-29	60	133	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
KRELEKRRRV VVVEDEELNN DEVGSLNLNL GGQVYPVVDG DVKSGKKTKI VGSAVSRAVC 60 QVEDCRADLS NAKDYHRRHK VCDMHSKATK ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC 120 RRRLAGHNKR RRKTHPDNVV SGGSLNDERG SSYLLISLLR ILANMHSNNS DQTKDQDLLS 180 HLFRNLAGVV GTNNVRNISG LLQGSQGLLN AGTSNGNVEK VSDVVSTGPE PVRSSASASM 240 IDHCIRFSDP LRSVGQSGSV PASDLIQKRI AAHDARSGIV QGLLGCQSKE AFPSRDSLSA 300 KANELEATFG RSKMSNIDLN NVYDDSQDHI ENLERSINLG TGSLCSRLWV QPASNKSTPP 360 QTSANSDSTS SQSPSSSSGD AQSRTDRIVF KLFGKDPNDF PIVLRRQILD WLSHSPTDIE 420 SYIRPGCIIL TIYLRLGKPT WEELCCDLGS SLRKLLDSSD DSFWRMGWLY ARVQHSVAFV 480 YNGLLLLPLI SSVKPIAVSV SARAKFMVKG FNLSWSTTRL LCAIEGKYLV QEACYDLMDG 540 ADEHDELQHL SFVCSMPNVY GRGFIEVEDH GLSSSFFPFI VAEQEVCSEI CMLEGVIEAA 600 EISDNFQKIS EKTEIKDQAL DFVHEMGWLL HRSRVKFRLG HLDSNSGLFS FKRFRWLMEF 660 SMERDWCAVV KKLLGILFEG TVDTGEHTSI ELALLDMGLL HRAVRRNCRP MVELLLHFSP 720 GKELGKLGPQ QKQLVDKAGS SFIFKPDVIG PAGLTPLHVA ACRDDAEHVL DALTDDPGLV 780 RFHLLIPVLL NSNPLA

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

KRELEKRRRV VVVEDEELNN DEVGSLNLNL GGQVYPVVDG DVKSGKKTKI VGSAVSRAVC  60
QVEDCRADLS NAKDYHRRHK VCDMHSKATK ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC  120
RRRLAGHNKR RRKTHPDNVV SGGSLNDERG SSYLLISLLR ILANMHSNNS DQTKDQDLLS  180
HLFRNLAGVV GTNNVRNISG LLQGSQGLLN AGTSNGNVEK VSDVVSTGPE PVRSSASASM  240
IDHCIRFSDP LRSVGQSGSV PASDLIQKRI AAHDARSGIV QGLLGCQSKE AFPSRDSLSA  300
KANELEATFG RSKMSNIDLN NVYDDSQDHI ENLERSINLG TGSLCSRLWV QPASNKSTPP  360
QTSANSDSTS SQSPSSSSGD AQSRTDRIVF KLFGKDPNDF PIVLRRQILD WLSHSPTDIE  420
SYIRPGCIIL TIYLRLGKPT WEELCCDLGS SLRKLLDSSD DSFWRMGWLY ARVQHSVAFV  480
YNGLLLLPLI SSVKPIAVSV SARAKFMVKG FNLSWSTTRL LCAIEGKYLV QEACYDLMDG  540
ADEHDELQHL SFVCSMPNVY GRGFIEVEDH GLSSSFFPFI VAEQEVCSEI CMLEGVIEAA  600
EISDNFQKIS EKTEIKDQAL DFVHEMGWLL HRSRVKFRLG HLDSNSGLFS FKRFRWLMEF  660
SMERDWCAVV KKLLGILFEG TVDTGEHTSI ELALLDMGLL HRAVRRNCRP MVELLLHFSP  720
GKELGKLGPQ QKQLVDKAGS SFIFKPDVIG PAGLTPLHVA ACRDDAEHVL DALTDDPGLV  780
RFHLLIPVLL NSNPLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	59	133	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	9	KRRRV
2	128	134	KRRRKTH

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488746.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_006488747.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A191XS81	0.0	A0A191XS81_9ROSI; Squamosa promoter-binding protein 14
TrEMBL	V4S1A6	0.0	V4S1A6_9ROSI; Uncharacterized protein
STRING	XP_006488745.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]