PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1178_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 418aa    MW: 45291.4 Da    PI: 4.7613
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1178_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box193e-06444539
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                   +C+ +++++ + +C+++  +lC +C  + H+       H++
  Neem_1178_f_2  4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                   6*****************************65677777765 PP
2zf-B_box22.22.8e-074689441
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                     C++++++++   C + ++ lC++C   +H g       H++++
  Neem_1178_f_2 46 LLCERCNSQPALVRCAEERVSLCQNCDWIGH-GtstsdstHKRQT 89
                   57*****************************.5588888888766 PP
3CCT621.9e-21361404144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R +a++RYkeK+ktRkF+K++rY+sRKa+A+ R+RvKGrFvk+ 
  Neem_1178_f_2 361 RSKAVMRYKEKKKTRKFDKRVRYASRKARADVRKRVKGRFVKAG 404
                    899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.471147IPR000315B-box-type zinc finger
SMARTSM003369.0E-9447IPR000315B-box-type zinc finger
CDDcd000215.17E-7447No hitNo description
PROSITE profilePS501198.7744390IPR000315B-box-type zinc finger
CDDcd000215.26E-54790No hitNo description
SMARTSM0033644890IPR000315B-box-type zinc finger
PfamPF062033.0E-16361403IPR010402CCT domain
PROSITE profilePS5101715.458361403IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGYMCDFCGD QRSIVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPALVRC  60
AEERVSLCQN CDWIGHGTST SDSTHKRQTI NCYSGCPSAA ELSSIWSFVL DVQSVGESAC  120
EQELGLMSIT DDSTKNSFGP NEDTISQNIS GGGVEANDVC DLDKSNVWVG TSSVPGLNSA  180
KQNLEQTPAS ANNPTLPKLC CSGTKGLVFC EDDDLYEDFN MDEVGLNFEN YEELFGVTLN  240
HSEELLENGG IDSLFGTKDM SAADSNCQGA VAAEGSSVGL VNAIQPACSN AASADSMMST  300
KTEPILCFTA KQAHSSLSFS GLTGDSNPGD YQDCDASSML LMGEPPWCPP CPETTYTSAS  360
RSKAVMRYKE KKKTRKFDKR VRYASRKARA DVRKRVKGRF VKAGDAYDYD PLNQTRSC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6704317e-93KM670431.1 Dimocarpus longan CONSTANS-LIKE 9-1 mRNA, complete cds, alternatively spliced.
GenBankKM6704327e-93KM670432.1 Dimocarpus longan CONSTANS-LIKE 9-2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447848.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_006469416.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_015382901.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_024951289.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-157COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLV4U5670.0V4U567_9ROSI; Uncharacterized protein
STRINGXP_006469416.10.0(Citrus sinensis)
STRINGXP_006447847.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-124CONSTANS-like 9