PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11775_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 398aa    MW: 45322.9 Da    PI: 9.1768
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11775_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.6e-17898299
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    f+v +p+   +++ l +p kf++++g +   s   tl+ ++gr W v l  +k  g++++  GW +Fv+ + +++g fvvFk+ ++s+f  +v +f+
  Neem_11775_f_4  8 FQVILPATIEAKK-LPIPQKFLRKYGDE--LSSIATLTLPNGRDWLVGL--TKDEGKVWFHHGWHDFVEYHSICVGYFVVFKYANNSNF--HVLIFD 97
                    5556566666665.9**********865..77799999***********..********************************999999..****99 PP

                    S CS
              B3 99 k 99
                    +
  Neem_11775_f_4 98 T 98
                    7 PP
2B339.78.5e-13302389596
                     -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++s++  s+ +++p kfa+e+  + +  +   ++l+  +gr+  vk+  + ++ ++++++ W eF  +++LkegD+++F+l+++++  l+v +
  Neem_11775_f_4 302 ILSSHNIDSSSVYVPTKFAKEYlrS-D-VK--CIKLQYCDGREQAVKI--THYGVGMFIKGVWDEFSLDKKLKEGDICLFELIRTKDVLLKVFI 389
                     45788889999***********743.3.33..39**************..999999***************************98887566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-233101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-253101IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-16597No hitNo description
PROSITE profilePS5086313.211699IPR003340B3 DNA binding domain
SMARTSM010191.6E-14799IPR003340B3 DNA binding domain
PfamPF023629.2E-141198IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-16292393IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-18293393IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-13297390No hitNo description
PROSITE profilePS5086311.166298393IPR003340B3 DNA binding domain
SMARTSM010194.9E-11299393IPR003340B3 DNA binding domain
PfamPF023626.6E-11301390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAETPHFFQV ILPATIEAKK LPIPQKFLRK YGDELSSIAT LTLPNGRDWL VGLTKDEGKV  60
WFHHGWHDFV EYHSICVGYF VVFKYANNSN FHVLIFDTTA CEIPYPSRKM CSPSPQNQAN  120
YSPASASSST FQNFAATLDS LKFKNHGETQ GKKGEMKEVE VKHEPVDVYE ARQGKWKENE  180
MYNSQGTSKC KRDPSKLAEH FCPPGTSFQD LDIKTTTRNV KDKHGEKFIG TGSELKKAAY  240
EVRNHTKVEA NKGTKLDEDN LFALFATKGI YIARRYLAEE ERKRAIGIAR LLKPTNPSFM  300
VILSSHNIDS SSVYVPTKFA KEYLRSDVKC IKLQYCDGRE QAVKITHYGV GMFIKGVWDE  360
FSLDKKLKEG DICLFELIRT KDVLLKVFIF HASADKSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1927439324143B3 domain-containing transcription factor VRN1
4i1k_B5e-1927439324143B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1853637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-27B3 family protein