PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11747_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | SBP | ||||||||
Protein Properties | Length: 319aa MW: 34486.3 Da PI: 9.1856 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.8 | 4.7e-41 | 24 | 100 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC adl+++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ Neem_11747_f_2 24 CLVDGCVADLAKCRDYHRRHKVCELHSKTPKVTIQGHEQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.4E-34 | 16 | 85 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.864 | 21 | 98 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.27E-38 | 22 | 103 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.9E-30 | 24 | 97 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MESSASSSSK RARAPSNGNQ VPSCLVDGCV ADLAKCRDYH RRHKVCELHS KTPKVTIQGH 60 EQRFCQQCSR FHSLVEFDEG KRSCRKRLDG HNRRRRKPQP DSLSINSGRF FPEHQGTKFI 120 PFGSPQVFPA GAVTTALAGI VKAKTDIMLH NYHSQIDFSN RNLFLGSSSD NYKGGKQFPF 180 LEGGTNSTLH GASVCQPLLG ANTSVGNRGS SQKIFCSGLN SVVNSSRALS LLSSPQSETG 240 EIGFSHMVQT DHSIPAAQSL IPSLNYSGLG MNGEPIGSNL VTDSSSTANF HGHGQDTFQI 300 GADGSSRTGT HQTLSFSWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-28 | 24 | 97 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 97 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042269.1 | 1e-142 | teosinte glume architecture 1 | ||||
Refseq | XP_024956187.1 | 1e-142 | teosinte glume architecture 1-like | ||||
Refseq | XP_024956188.1 | 1e-142 | teosinte glume architecture 1-like | ||||
Swissprot | Q6YZE8 | 3e-64 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A1Q1NIB5 | 1e-147 | A0A1Q1NIB5_LITCN; Squamosa promoter binding protein-like protein | ||||
STRING | XP_006484146.1 | 1e-141 | (Citrus sinensis) | ||||
STRING | XP_006437993.1 | 1e-141 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4111 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-52 | SBP family protein |