PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_11719_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 164aa MW: 19247 Da PI: 8.8213 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.5 | 3.6e-21 | 12 | 131 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +Ptdeelv +yL kv + ++ + ik++++y++eP +Lp ++k+++ ++yfF++ + ++g r+++ gyW++ + +++++g+ v Neem_11719_f_1 12 DPTDEELVFHYLIGKVLDGL-DF-DYIKNLELYDHEPAELPsIACKTGHYKMYFFTRIRY-LNNGGIVDRKARGGYWSTVWEPFYIHDRDGNSVA 103 7**************99876.55.78***************5577777789999998766.56788999999*********************** PP NAM 102 lkktLvfy.kgrapkgektdWvmheyrl 128 k++ v+y k +a++++kt W +ey l Neem_11719_f_1 104 KKTSPVYYmKDQASEPVKTGWRPKEYML 131 ********5569999***********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.377 | 5 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-10 | 12 | 130 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-23 | 12 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MRKFHSMVTI LDPTDEELVF HYLIGKVLDG LDFDYIKNLE LYDHEPAELP SIACKTGHYK 60 MYFFTRIRYL NNGGIVDRKA RGGYWSTVWE PFYIHDRDGN SVAKKTSPVY YMKDQASEPV 120 KTGWRPKEYM LLQSHLPNQS DKLSEMLTLS VVYLRPQGRS SARW |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006484725.1 | 8e-32 | uncharacterized protein LOC102615249 isoform X1 | ||||
Refseq | XP_024957056.1 | 5e-32 | uncharacterized protein LOC102615249 isoform X2 | ||||
TrEMBL | A0A2H5NSS8 | 2e-30 | A0A2H5NSS8_CITUN; Uncharacterized protein | ||||
STRING | XP_006484725.1 | 3e-31 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39820.1 | 1e-12 | NAC domain containing protein 94 |