PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11713_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 604aa MW: 68428 Da PI: 4.8732 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.1 | 7.1e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+++yL+ k++gk+ ++ +vi+e+d++k+ePwdLp + +k++++ew+fF+++d+ky++g+r nrat++gyWkatgkd++++ Neem_11713_f_2 9 LPLGFRFRPTDEELIDFYLRLKINGKNDDV-RVINEIDVCKWEPWDLPdlSVIKTKDQEWFFFCPQDRKYPNGHRLNRATEAGYWKATGKDRKIK 102 699************************999.99**************96448899999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++l+g+kktLvf+ grapkg++t+Wvmheyr+ Neem_11713_f_2 103 S-GNNLIGMKKTLVFHIGRAPKGKRTNWVMHEYRA 136 *.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-62 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.488 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MAVLSMNSLP LGFRFRPTDE ELIDFYLRLK INGKNDDVRV INEIDVCKWE PWDLPDLSVI 60 KTKDQEWFFF CPQDRKYPNG HRLNRATEAG YWKATGKDRK IKSGNNLIGM KKTLVFHIGR 120 APKGKRTNWV MHEYRATTED LDGTKPGQSA FVLCRLFKKQ DESIEVSNCD EVEPSDSSPI 180 SAKSCPQSDF AIDQTSQDKK TSDTQALVEC QSKISNAYDA EDQTTDEVTT TEIYPTMGEE 240 DFDALNELMS EPLDCSFLHP LYSPVPGERG PFYHPDIGDL TGNQMEVHFQ FESDAYEREF 300 LDSVLKNSDE HLFDETDNQR NSFLESANPK KDSRSCSKSD VEVTQALPEP DFPSSFWYGK 360 NIVREAPLKI ERIPDNYRIA TSQISVNESS INFTNSRYLK KQNLFTDFGS SELDVFSTGS 420 SRGQFSNALN DYSESNNHTD AISSSSGIRI RTRQPRSHQH IQGFMAQGDA PKRLHLEVKL 480 QVGSVNTKSS FESLMLEEDE SKPIVAEDVI NAEKEYPEHV PHAAATSAIY ELQGNFHFES 540 SENNNISEEL IMDGRAKGRS NSTIFKTSQA GHSRWSFAAM FRAAAVAVMF AILISSWRCL 600 CLNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-46 | 4 | 163 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-46 | 4 | 163 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-46 | 4 | 163 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-46 | 4 | 163 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 4 | 163 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 4 | 163 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 4 | 163 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 4 | 163 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 4 | 163 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 4 | 163 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 4 | 163 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 4 | 163 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-46 | 4 | 163 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-46 | 4 | 163 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006478082.1 | 0.0 | NAC domain-containing protein 62-like isoform X3 | ||||
TrEMBL | A0A067DNN3 | 0.0 | A0A067DNN3_CITSI; Uncharacterized protein | ||||
STRING | XP_006478080.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-93 | NAC 014 |