PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11669_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 339aa MW: 38627.1 Da PI: 6.6353

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11669_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.8e-32	164	218	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Neem_11669_f_1 164 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRM 218 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.635	161	221	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-17	162	218	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	163	219	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	164	219	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	168	217	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-20	249	295	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEEEQQRTLD PVRSSGTILG RFGSPASAFY ATERFMGFPQ YECEAGNPSV SSDFSRVSDS 60 QQFHSYQSPG ENYSIVSADQ AESLEIPWKF CKSPETSFRN SPLLGRPFSA PFDENQDHRV 120 CNNESYGLTS VSQLNYTYQK EKHSPRFSLS SGNSVSNGAV ITSKTRIRWT QDLHEKFVEC 180 VNRLGGADKA TPKAILKLMD SDGLTIFHVK SHLQKYRMAK YIPEYAGGNS EKRTSLNDLP 240 QLDVRATLQI KEALQLQLDV QRRLHEQLEI QRNLQMRIEE QGKQLKMLFD QQQKTNKNPW 300 KNQNLDIVVP EEDPRFSLED VEVSIAENSG NTRFPSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	164	221	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	164	221	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-22	164	221	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-22	164	221	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-22	164	221	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-22	164	221	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	164	221	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	164	221	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	164	221	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	164	221	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	164	221	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	164	221	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015380887.1	1e-154	myb family transcription factor PHL5
TrEMBL	A0A2H5MXR0	1e-153	A0A2H5MXR0_CITUN; Uncharacterized protein
STRING	XP_006429845.1	1e-153	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-81	G2-like family protein