PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11663_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 1009aa MW: 114333 Da PI: 6.4414

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11663_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.5	4.6e-23	200	285	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YAke+GFsvrk k + +g+i kr f Cs+eg+r ++++ ++++ +r+etrtgC+a++k + e +gkw+++ + HnH+l Neem_11663_f_1 200 KFYISYAKEIGFSVRKGKVWRL-SDGTIRKRFFFCSREGYRVKKQSG-KTTKYQRKETRTGCEAMVKFTIE-NGKWVISGFIPTHNHDL 285 6*****************98.7888************9999.99999*************9.*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-20	200	285	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-23	397	490	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.903	675	713	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-5	683	712	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-6	688	715	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence Send to blast
MDAIDDSVSG TNPSTALLSN PEHFVHDHEE LWSSMIADLS ENQGDHVPVT APPLHNLEAT 60 STSVFDSERC WISDLPQPGR NNSSSDCWSA ASEPGSLNIL PEASFKVGNA EGENGNVAEM 120 IIHDQELGNQ QMEHSLKHIP SCNTHLLSLE TNGEDFMFSE SDEDEIQSES TVNLKEETFR 180 GNSPIPEVGM VFSSEEEAYK FYISYAKEIG FSVRKGKVWR LSDGTIRKRF FFCSREGYRV 240 KKQSGKTTKY QRKETRTGCE AMVKFTIENG KWVISGFIPT HNHDLEGLPK LMVGSSTNIS 300 GAHSMSVTMN KAGILKEAGP ANSVGFYSID CTSFSHDERT SMPQLVDGQS LMNYFRHLQM 360 EDPSFFYSVQ VNAENCLTNF FWSDGRSKLD YDYFGDVLIM DKTFRIDAYN MTYATFLGIN 420 HHQQYVLFGG AFLLDDSKDS FIWLLRTFLD AMGRRQPKTI FTDGYQAMAD AIEAVLPKTH 480 HCCGIWYILQ SAKKHLSNCY GQTGFDIIFN ECIFDCESEE EFESRWESLL AQYDLHENPW 540 LKTLYTLRRK WCHCFCENIF SAGIQSIQGC QSISHFLHSL TNKIMTPLQL VQQYSKVAEQ 600 QRRKELYEDF HGNESAPATI LRSNAIEKEA AKIYTCSMFK LFREELLGCL SVAVETIPGD 660 GITTKFRLTD NSNKKEKIVE FDSSESHLTC TCKKYESVGI LCVHVLKVLN TRNIFQIPTQ 720 YILKRWTKLA KEGMIVDGHE GEIVDDSRSL CLHKSKLMHK AVHVITKSLA VEETGMIVED 780 SLNMALRKVE DILRTKNTVH LNREVDVHYK DDVADANDIV CVETQQMKSN SVTINQQEAS 840 NCSIESQLKK RKHENEVRET KCKSSDNFVA HHHSFKAAAK GGDDKGSRRG ASRSYCMGEN 900 SRQSAFISHR PPLPSQSTCL QFKDPSRSTG NVQLATQLTR EEMQKEISKL RNENQRILKL 960 FVSMRADNSF QQFIKKNKVI QQENLALPCQ IKAIRGDNAK LSVVSESLP

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence Send to blast

MDAIDDSVSG TNPSTALLSN PEHFVHDHEE LWSSMIADLS ENQGDHVPVT APPLHNLEAT  60
STSVFDSERC WISDLPQPGR NNSSSDCWSA ASEPGSLNIL PEASFKVGNA EGENGNVAEM  120
IIHDQELGNQ QMEHSLKHIP SCNTHLLSLE TNGEDFMFSE SDEDEIQSES TVNLKEETFR  180
GNSPIPEVGM VFSSEEEAYK FYISYAKEIG FSVRKGKVWR LSDGTIRKRF FFCSREGYRV  240
KKQSGKTTKY QRKETRTGCE AMVKFTIENG KWVISGFIPT HNHDLEGLPK LMVGSSTNIS  300
GAHSMSVTMN KAGILKEAGP ANSVGFYSID CTSFSHDERT SMPQLVDGQS LMNYFRHLQM  360
EDPSFFYSVQ VNAENCLTNF FWSDGRSKLD YDYFGDVLIM DKTFRIDAYN MTYATFLGIN  420
HHQQYVLFGG AFLLDDSKDS FIWLLRTFLD AMGRRQPKTI FTDGYQAMAD AIEAVLPKTH  480
HCCGIWYILQ SAKKHLSNCY GQTGFDIIFN ECIFDCESEE EFESRWESLL AQYDLHENPW  540
LKTLYTLRRK WCHCFCENIF SAGIQSIQGC QSISHFLHSL TNKIMTPLQL VQQYSKVAEQ  600
QRRKELYEDF HGNESAPATI LRSNAIEKEA AKIYTCSMFK LFREELLGCL SVAVETIPGD  660
GITTKFRLTD NSNKKEKIVE FDSSESHLTC TCKKYESVGI LCVHVLKVLN TRNIFQIPTQ  720
YILKRWTKLA KEGMIVDGHE GEIVDDSRSL CLHKSKLMHK AVHVITKSLA VEETGMIVED  780
SLNMALRKVE DILRTKNTVH LNREVDVHYK DDVADANDIV CVETQQMKSN SVTINQQEAS  840
NCSIESQLKK RKHENEVRET KCKSSDNFVA HHHSFKAAAK GGDDKGSRRG ASRSYCMGEN  900
SRQSAFISHR PPLPSQSTCL QFKDPSRSTG NVQLATQLTR EEMQKEISKL RNENQRILKL  960
FVSMRADNSF QQFIKKNKVI QQENLALPCQ IKAIRGDNAK LSVVSESLP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430508.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024038030.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024038031.1	0.0	protein FAR1-RELATED SEQUENCE 7
TrEMBL	V4S8C7	0.0	V4S8C7_9ROSI; Uncharacterized protein
STRING	XP_006430508.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19171	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-98	FAR1-related sequence 5