PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11594_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 294aa MW: 32340.8 Da PI: 8.5788

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11594_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	86	113	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 ++h+e+ErrRR+riN +++Lr l+P Neem_11594_f_1 86 KSHSEAERRRRERINAHLDTLRGLVPCH 113 58************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.57	83	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-7	86	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-11	87	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-12	87	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-8	89	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	9.3E-4	187	245	No hit	No description
CDD	cd04873	1.90E-5	190	258	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MAAYSFNSNS SLGHGFGSLY EPLLGGFNGV FRDGSVSQSL VLDSEKGELV KAMSLVLDSE 60 KGELVKAPVK VGKKEVSEAK AMAALKSHSE AERRRRERIN AHLDTLRGLV PCHGKVWADA 120 ISMTYFNSRF DCYSQMDKAT LLAKVISQVK ELKKNAMEAS KGFLIPMDAD EVKVEPYNDE 180 AGDANSFFKV SICCVYRPEL LSDLRRALDS LPLKMIKSEI STLGGRLKNV FVFTSYREGN 240 MDNAEASKLL ADAVHQALSS VLERGSPSPE YSPRTTLPNK RQRTSFFESS SSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	96	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449491.1	1e-123	transcription factor bHLH30
Refseq	XP_006467661.1	1e-123	transcription factor bHLH30
TrEMBL	A0A067GQY4	1e-122	A0A067GQY4_CITSI; Uncharacterized protein
TrEMBL	A0A2H5N3B2	1e-122	A0A2H5N3B2_CITUN; Uncharacterized protein
TrEMBL	V4UKA3	1e-122	V4UKA3_9ROSI; Uncharacterized protein
STRING	XP_006467661.1	1e-122	(Citrus sinensis)
STRING	XP_006449491.1	1e-122	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15581	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	3e-26	bHLH family protein