PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11593_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ERF

Protein Properties

Length: 235aa MW: 24766.3 Da PI: 4.5468

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11593_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.7	4.5e-16	73	121	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa a++ a+++l+g Neem_11593_f_1 73 NYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAALALKG 121 69*6..678*****843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.16E-27	72	130	No hit	No description
Pfam	PF00847	1.2E-9	72	121	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.231	73	129	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.6E-26	73	130	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-17	73	130	IPR016177	DNA-binding domain
SMART	SM00380	2.5E-27	73	135	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MADPDPDPDH SLIEQPQPRP NIKVPQVDPS PASALPSSSS SSPRPVSSSS SPRPVLSPAG 60 LTGQSAGTGR HPNYRGIRSR SGKWVSEIRE PRKTTRIWLG TYPTPEMAAT AYDVAALALK 120 GPDTPLNFPN MILSYPIPPS TSASDIRAAA AQAAAARQKS DSGANPDPGR SEGEGTSSTC 180 MASSQEFVDE EELLNMPNLL VDMAEGMLVS PPRINTPSSD DSPGNSDAES LWSYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-13	71	130	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00558	DAP	Transfer from AT5G52020	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090325.1	1e-78	ethylene-responsive transcription factor ERF027
Refseq	XP_017973036.1	2e-78	PREDICTED: ethylene-responsive transcription factor ERF027
Refseq	XP_022734841.1	3e-78	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	2e-56	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A1L6CAW2	6e-80	A0A1L6CAW2_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBL	A0A1L6CB44	6e-80	A0A1L6CB44_VERFO; AP2/ERF domain-containing transcription factor
STRING	EOY23085	2e-77	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1957	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	9e-51	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]