PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11567_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 431aa MW: 47773.2 Da PI: 4.6191

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11567_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.2	6.9e-49	6	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtd elv++yLk+kv g+kl + +i+evdiyk+ PwdLp ++++++ +wyfF++r+kky++g r nrat+ g Neem_11567_f_1 6 LPPGFRFHPTDVELVKYYLKRKVMGRKLYE--AIAEVDIYKFAPWDLPVcvfltevpfasdksCLRSGDLKWYFFCPREKKYSNGGRMNRATELG 98 79***********************665..8***********6689999999998877777888********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkd++v+ ++e+vg+ ktL+f++g+ap+g++tdWvmheyr+ Neem_11567_f_1 99 YWKTTGKDRPVHY-NNEVVGMIKTLIFHRGKAPQGHRTDWVMHEYRI 144 *********.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-54	3	167	IPR003441	NAC domain
PROSITE profile	PS51005	52.743	6	167	IPR003441	NAC domain
Pfam	PF02365	3.3E-26	7	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MAKTSLPPGF RFHPTDVELV KYYLKRKVMG RKLYEAIAEV DIYKFAPWDL PVCVFLTEVP 60 FASDKSCLRS GDLKWYFFCP REKKYSNGGR MNRATELGYW KTTGKDRPVH YNNEVVGMIK 120 TLIFHRGKAP QGHRTDWVMH EYRIDEKDLA ERGVVQDAYV LCIVFQKEGP GPRNGAQYGA 180 PFREEDWDDD DDDDGDIDCM EIVPSALPPP PVSNQINPME ACSHVPESQC IGTSDSCLSD 240 NNLSTYKVPA PAPINNDKPD NSGANIEASP SWDGIDIYNG LGDLGNLRGF SGGGYNFFAG 300 DDAAYNLSGG FPSDNVPFLE LLDLDAPLNY SAEAHEYEII RNEPYTDRNC YIPEHLSYQV 360 NTCFSPPAML PGAPPRLEDQ LAASLKENNS WGNPKEDALN HGGATTIFKK LSAGSSHASE 420 DLGGGGSNYP R

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MAKTSLPPGF RFHPTDVELV KYYLKRKVMG RKLYEAIAEV DIYKFAPWDL PVCVFLTEVP  60
FASDKSCLRS GDLKWYFFCP REKKYSNGGR MNRATELGYW KTTGKDRPVH YNNEVVGMIK  120
TLIFHRGKAP QGHRTDWVMH EYRIDEKDLA ERGVVQDAYV LCIVFQKEGP GPRNGAQYGA  180
PFREEDWDDD DDDDGDIDCM EIVPSALPPP PVSNQINPME ACSHVPESQC IGTSDSCLSD  240
NNLSTYKVPA PAPINNDKPD NSGANIEASP SWDGIDIYNG LGDLGNLRGF SGGGYNFFAG  300
DDAAYNLSGG FPSDNVPFLE LLDLDAPLNY SAEAHEYEII RNEPYTDRNC YIPEHLSYQV  360
NTCFSPPAML PGAPPRLEDQ LAASLKENNS WGNPKEDALN HGGATTIFKK LSAGSSHASE  420
DLGGGGSNYP R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-42	2	168	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432239.1	1e-178	NAC domain-containing protein 82 isoform X1
Refseq	XP_006432240.1	1e-178	NAC domain-containing protein 82 isoform X1
Refseq	XP_006464643.1	1e-178	NAC domain-containing protein 82-like
Refseq	XP_024039820.1	1e-178	NAC domain-containing protein 82 isoform X2
Swissprot	Q9FY82	2e-89	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	V4SD00	1e-177	V4SD00_9ROSI; Uncharacterized protein
TrEMBL	V4V129	1e-177	V4V129_9ROSI; Uncharacterized protein
STRING	XP_006464643.1	1e-178	(Citrus sinensis)
STRING	XP_006432239.1	1e-178	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3692	25	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	9e-88	NAC domain containing protein 82

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]