PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11490_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 923aa MW: 101722 Da PI: 6.6563 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.8e-18 | 315 | 414 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+v+F++ + e++ Neem_11490_f_1 315 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-PEGK 407 89**************************555566778***************9989999999***9.********************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ Neem_11490_f_1 408 LVMGFRK 414 7777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.5E-31 | 309 | 420 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-19 | 312 | 415 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.67E-22 | 313 | 414 | No hit | No description |
SMART | SM01019 | 1.0E-19 | 315 | 416 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-16 | 315 | 414 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 315 | 416 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.624 | 606 | 656 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.4E-11 | 611 | 653 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 923 aa Download sequence Send to blast |
MSSSSKICFN KECKELKSDR PRKGWLLRGG EFAELCDRCG CCESCSKRVH CGCIASVNTF 60 TLLDAGGIEC MTCARKNVIS APTPSWPPSL FYQTPLPERM KDFSVKNWTQ LAGSGPVPWR 120 QAATLFNSPM SHTELRPKVP YEVELTMDRI NATERLAASS LEKRKVEDFS ERLVNGGLKT 180 GSREIPENGN AGLNLDEQPS SYLNKSQQSS SFKDDSSSPH FGLAVSYASP NETNGQIGVS 240 GTPLRPPLQQ PLVKQFHGNL HNGVDSLGET QVRNGRPRVD PRGRGQLLPR YWPRFTDQDL 300 QQISADSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPPISQPEGL PLKVQDSKGK 360 EWIFQFRFWP NNNSRMYVLE GVTPCIQNMQ LQAGDIVTFS RLEPEGKLVM GFRKASTNQA 420 SDQDSEATKA GTGVSTNGDL RLPGFLSIDQ AELADPSSWS KVDKSGYIAT EAIGAKSSVS 480 RKRKNTTLGS KSKRLKIENE DLIELKLTWE EAQGLLRPPP NNVPSVVVIE GYEFEEYERR 540 TRYDALDVLV YLVSTINFDV NSPDELVVLW EAPILGKPTI FATDNMGDIF ELTILMKSFE 600 GESSPRNEKI QWIQCEDCSK WRKVPANALL PSKWTCSGNL WDPERSVCSA AQELQLEDLI 660 PPCNNSAPPK KMKAAKQEPD NVEALEGLDT LANLAILGEG EALPASSQAT TKHPRHRPGC 720 SCIVCIQPPS GKGPKHKQTC TCNVCLTVKR RFHTLMLRRE KKQSEKEAET SRKKQQQQKQ 780 PLPDKSADDE PLSCSKTGNN SPSEKKVVSE GSDDDSNRMK SSTSPFKGQI DLNIQPERED 840 ELSPGSDSGS IVRLIQDATD KYLSQQRLPS SVINSNTALS EGMQCGETGE KIGGGITLDG 900 SRQDADEDDH GTLPMKASIS ANG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-62 | 293 | 416 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 481 | 495 | KRKNTTLGSKSKRLK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR492070 | 2e-40 | KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449227.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | V4U907 | 0.0 | V4U907_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449227.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6857 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-151 | high-level expression of sugar-inducible gene 2 |