PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11486_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 221aa    MW: 24966 Da    PI: 7.5534
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11486_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.23e-27391632128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ++G+rF+P+de l ++yL  k++g++  ++++ ikevd+y+++P+dL   +++ ++ ++yfF++ +kky+       + + g Wk+  +   v+ 
  Neem_11486_f_1  39 AVGIRFNPNDEVLASHYLVGKLSGSTeGPIFSLIKEVDVYQHDPSDLSrLAYDFGKGKMYFFTPLNKKYK-----VPVPSGGHWKKIREPSYVKG 128
                     68*********************9997778889**************944555677799********995.....346679************** PP

             NAM  95 kkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                     k+g+ + +k+tLv+yk+ ++++++kt+W+m+ey l
  Neem_11486_f_1 129 KDGNPIATKNTLVYYKNdQKSNPVKTQWLMKEYML 163
                     ***************875788999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3235186IPR003441NAC domain
PROSITE profilePS5100531.64238186IPR003441NAC domain
PfamPF023654.1E-1540162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MASSSSSSKY ANERNAYNLS KISNSLIADD SIKWQEKVAV GIRFNPNDEV LASHYLVGKL  60
SGSTEGPIFS LIKEVDVYQH DPSDLSRLAY DFGKGKMYFF TPLNKKYKVP VPSGGHWKKI  120
REPSYVKGKD GNPIATKNTL VYYKNDQKSN PVKTQWLMKE YMLLDNQLLL KQNVDNSWTL  180
CVVYHSKRQM DGQKISAEEE NVFSSDSCED STSDMSSSDS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-174119118173Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_006471482.15e-32(Citrus sinensis)
STRINGXP_006432687.15e-32(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1852528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-18NAC domain containing protein 47