PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11316_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARR-B
Protein Properties Length: 625aa    MW: 68596.5 Da    PI: 7.2625
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11316_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.91.5e-25162215155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH+rF++a++++ G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Neem_11316_f_2 162 KAKVVWTNSLHNRFLQAIKHI-GLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 215
                     6799*****************.********************************6 PP
2Response_reg60.49.4e-2128428109
                     EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  28 eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     +++++ +al+++  k++++Dl+l+D+ mp+m+G+el k+i+ee  +lp++++++ + e+++l+ l  G+  ++ Kp++pe+l +
  Neem_11316_f_2   2 TVKSPLDALATIriKQEQIDLVLTDLHMPRMNGIELQKQINEEF-HLPVVIMSSDDRESMILKSLASGVVFYILKPINPEDLKN 84 
                     577888899988667888************************99.************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004480.007186IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.965190IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.1E-24297No hitNo description
CDDcd001565.39E-20290No hitNo description
SuperFamilySSF521724.13E-22391IPR011006CheY-like superfamily
PfamPF000728.2E-17484IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.1E-24143149No hitNo description
PROSITE profilePS5129412.043159218IPR017930Myb domain
SuperFamilySSF466894.84E-19159219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-26160219IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-26162215IPR006447Myb domain, plants
PfamPF002494.6E-6165214IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MTVKSPLDAL ATIRIKQEQI DLVLTDLHMP RMNGIELQKQ INEEFHLPVV IMSSDDRESM  60
ILKSLASGVV FYILKPINPE DLKNVWQYAI GSKKGKSILI EELASVEGGF SVESSTEKIS  120
YGNIGSASSV NEDKHHKKDS KRKSSKKEKE DQDGENPVAP KKAKVVWTNS LHNRFLQAIK  180
HIGLEKAVPK KILEFMNVPG LTRENVASHL QKYRIFLKRV AEKGAHALSR NFSERALRST  240
FASGHSSLTL RNAQDYALIR ARQQMRPFQA RYEGTMSALN ATNFGSTGFS SLTASSSNTA  300
SQVGLLGASQ TDFQYQSLFS NTNPPCQANK ASYGIGSNSN GADLLSHGLM KDTNSNQMYQ  360
QQSQTRSDLR NVGASPLNNF GTSAWKPSFP SGYENMGTWS NPFSTYAGIR LNDAGELVGI  420
GQANHNTNAL NGGYGLINGT GNDNVIAGPM ENSAFHHLVR GEPSCSVFNS ANYQFPPAFA  480
SANEEPANSS MLRPLSQQQY GLGNNGQNDF TFGLINNASG FGNITHLAAQ FGEGINIDDL  540
LFDPTDFQFP SQQQGAENAP VPKFPNGSYR AELNLQNNQS QNPDFSSAYG VEENALWIEP  600
TLEQACPIFN YFTILYFGIK ENHKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-23159221264ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044408.10.0putative two-component response regulator ARR21
TrEMBLA0A2H5NM340.0A0A2H5NM34_CITUN; Uncharacterized protein
TrEMBLV4S8980.0V4S898_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006490468.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.12e-55response regulator 21