PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11306_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24374 Da PI: 4.3676 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.4 | 6.5e-12 | 99 | 135 | 17 | 55 |
AP2 17 AeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 AeIrdp + k r++lg+f ta eAa+a+++a+ kl+g Neem_11306_f_2 99 AEIRDP---NrKGIRVWLGTFETAIEAARAYDHAAFKLRG 135 9****9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.832 | 83 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-19 | 94 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-21 | 98 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-15 | 98 | 145 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.81E-21 | 98 | 143 | No hit | No description |
Pfam | PF00847 | 1.5E-5 | 99 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MATPEEASTL ELISQFLLTD FASMDNFISS LNLYTSHNTN FDKATADISV SDYLNEPELN 60 QTDQSSSQSK SLSTLSTIPA AADFDLSSNV NPVKGLDAAE IRDPNRKGIR VWLGTFETAI 120 EAARAYDHAA FKLRGRKAIL NFPLEVGNSN SAESESQVNF GKRRKYEEAD TVERKAVKEA 180 PEETVTETVT PAGVGQLTPS SWTGFWDDVK GMFTVPPLSP ILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-18 | 98 | 146 | 15 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286001.1 | 2e-56 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A2H5PTC5 | 8e-52 | A0A2H5PTC5_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S7G6 | 1e-51 | V4S7G6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421525.1 | 2e-52 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7893 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61600.1 | 6e-43 | ethylene response factor 104 |