PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11103_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 281aa    MW: 30853.1 Da    PI: 4.2611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11103_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.3e-14164225255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pseng........krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr ++ +g+++AeIrd p + +         r++   g+++t+e+Aa a+++a+ +++g
  Neem_11103_f_1 164 HYRGVRKRP-WGKFAAEIRDqPLSKCaaqkpsliFRTSLAPGTYDTPEGAALAYDRAAFQMRG 225
                     6********.**********9988445556887555*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-14164234IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-22164234IPR001471AP2/ERF domain
PROSITE profilePS5103218.452164233IPR001471AP2/ERF domain
PfamPF008473.5E-9164225IPR001471AP2/ERF domain
SMARTSM003807.4E-25164239IPR001471AP2/ERF domain
CDDcd000181.67E-23164235No hitNo description
PRINTSPR003672.9E-13165176IPR001471AP2/ERF domain
PRINTSPR003672.9E-13215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MYTQNISESE FALLESIRQF LLEDDLDIPS TFPSEAIPEL DDLDIPMMAF PSETVPDDDL  60
DIPMAFPSEP FDVPLLPLYS PASSSSSFFF TENSSDSQSQ ESNSNSALNY VETDAYKAFQ  120
DAINVGWISF DQLDETEAVS NEITVDTTTT EKTAPARETD VPVHYRGVRK RPWGKFAAEI  180
RDQPLSKCAA QKPSLIFRTS LAPGTYDTPE GAALAYDRAA FQMRGSKAKL NFPHLIGSNV  240
VMVTPAAADK RGSLEPSTSS SSNSSFPHSE SPKPKRRKSG N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19164233260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19164238568ATERF1
3gcc_A2e-19164238568ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-25ethylene-responsive element binding factor 13