PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11066_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 460aa MW: 52985.1 Da PI: 6.7331

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11066_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	249.7	1.2e-76	94	457	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs.evsPilkfs 94 l++lLl A+av++++ la L +l +++ +gd++qR++ayf+ +Laarl+ s y+ + ++t+ ++e la++ l+ + P+ Neem_11066_f_2 94 LIHLLLITATAVDNNSVDLALDNLIELYQNVCLTGDSVQRVVAYFADGLAARLLTRKSPFYEMIMKEPTD---EEEFLAFTDLYRlSLRPFE--- 182 689**************************************************999999998888887...4444444444321334544... PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrl 186 e+ ++++ +H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ s eel+et++rL +f + + ++ fef+ l + Neem_11066_f_2 183 --------REEDDNNRSLHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGR----SIEELQETENRLVSFSKGFrNLVFEFQGL----M 261 ........4888999*********************99755566*****....9************9758***7....5 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 + +l +Lr k++E++aVnlv++l +l +vs +e+L+ v sl+P +v++veq+ ++ ++Fl rf+e+l+y++a+fdsl+ lp+es e Neem_11066_f_2 262 RSSKLINLRKKKNETVAVNLVFHLNTLN--NVSK---VSETLNSVHSLKPSIVILVEQDGGRSPKNFLSRFMESLHYFAAMFDSLDDCLPQESTE 351 56666799************9997..4444...4489************************************************** PP GRAS 282 rikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kv..k.sdgyrveee.sgslv.lgW 362 r ++E+ lg+ei++++ + +++ r e++e W+ +e+ GF +++s+k qaklll+ ++ + ++g++v e+ +g ++ lgW Neem_11066_f_2 352 RLSIEKNHLGKEIKSMLNNDKENgNYPRYEKMEIWKGSMENHGFAGIKMSSKSLIQAKLLLKirthycplQFdgEnNNGFKVFERdEGRAIsLGW 446 ***************99987889*****************************97433322221122225678887653566667* PP GRAS 363 kdrpLvsvSaW 373 +dr L+++SaW Neem_11066_f_2 447 QDRCLLTASAW 457 *********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.096	68	425	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-74	94	457	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MEDITVDEEE FLNLSLSLAI VADSCANNNN RKRKRNRVPF DPLNHHGHHQ EHQGCEGKIF 60 RLLQMREQML RLDNHHQRNK EAVHQHEDGK GLHLIHLLLI TATAVDNNSV DLALDNLIEL 120 YQNVCLTGDS VQRVVAYFAD GLAARLLTRK SPFYEMIMKE PTDEEEFLAF TDLYRLSLRP 180 FEREEDDNNR SLHVIDFDVS YGFQWPSLIQ SLSEKATSGN RISLRITGFG RSIEELQETE 240 NRLVSFSKGF RNLVFEFQGL MRSSKLINLR KKKNETVAVN LVFHLNTLNN VSKVSETLNS 300 VHSLKPSIVI LVEQDGGRSP KNFLSRFMES LHYFAAMFDS LDDCLPQEST ERLSIEKNHL 360 GKEIKSMLNN DKENGNYPRY EKMEIWKGSM ENHGFAGIKM SSKSLIQAKL LLKIRTHYCP 420 LQFDGENNNG FKVFERDEGR AISLGWQDRC LLTASAWHCV

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MEDITVDEEE FLNLSLSLAI VADSCANNNN RKRKRNRVPF DPLNHHGHHQ EHQGCEGKIF  60
RLLQMREQML RLDNHHQRNK EAVHQHEDGK GLHLIHLLLI TATAVDNNSV DLALDNLIEL  120
YQNVCLTGDS VQRVVAYFAD GLAARLLTRK SPFYEMIMKE PTDEEEFLAF TDLYRLSLRP  180
FEREEDDNNR SLHVIDFDVS YGFQWPSLIQ SLSEKATSGN RISLRITGFG RSIEELQETE  240
NRLVSFSKGF RNLVFEFQGL MRSSKLINLR KKKNETVAVN LVFHLNTLNN VSKVSETLNS  300
VHSLKPSIVI LVEQDGGRSP KNFLSRFMES LHYFAAMFDS LDDCLPQEST ERLSIEKNHL  360
GKEIKSMLNN DKENGNYPRY EKMEIWKGSM ENHGFAGIKM SSKSLIQAKL LLKIRTHYCP  420
LQFDGENNNG FKVFERDEGR AISLGWQDRC LLTASAWHCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-45	78	457	3	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006376315.1	0.0	scarecrow-like protein 21
TrEMBL	B9MW61	0.0	B9MW61_POPTR; GRAS family protein
STRING	POPTR_0013s11930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15761	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	6e-45	GRAS family protein