PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10938_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 365aa    MW: 40915.4 Da    PI: 9.4974
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10938_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.31.8e-4651191117
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++kv++ +++  ++i +vd++k+ePwdLp+k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdke+++ 
  Neem_10938_f_1   5 LPPGFRFHPTDEELITYYLTRKVADLSFSS-KAIVDVDLNKCEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATDAGYWKTTGKDKEIFR- 97 
                     79*************************999.88***************999999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkge 117
                      g lvg+kktLvfykgrapkg 
  Neem_10938_f_1  98 AGILVGMKKTLVFYKGRAPKGA 119
                     999****************985 PP
2NAM54.54e-1711916285129
             NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     atgkdke+++  g lvg+kktLvfykgrapkgek++Wvmheyrle
  Neem_10938_f_1 119 ATGKDKEIFR-AGILVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 162
                     79********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-483118IPR003441NAC domain
PROSITE profilePS5100555.2645182IPR003441NAC domain
PfamPF023651.2E-276161IPR003441NAC domain
SuperFamilySSF1019414.45E-22119182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLTRKVADL SFSSKAIVDV DLNKCEPWDL PAKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TDAGYWKTTG KDKEIFRAGI LVGMKKTLVF YKGRAPKGAT  120
GKDKEIFRAG ILVGMKKTLV FYKGRAPKGE KSNWVMHEYR LENKHPFKSA KEEWVVCRVF  180
QKSSAVKKPQ QTLSSQPSEG SPCDTNSIVN EFGDIELPNL NSIANLSTGF SNIPTQTYEN  240
NVNMNMLNMN LNMNNWAAAA REAAAAATLP SLAWPSSLLT SNLSMNSLLL KALQLKNNYQ  300
AREATSNENN NSFLQQQAAG ISRFESDLSS NFQASSSSKV LESVPVPVAV PQPQQEQPFN  360
LDSIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51418816171NO APICAL MERISTEM PROTEIN
1ut4_B2e-51418816171NO APICAL MERISTEM PROTEIN
1ut7_A2e-51418816171NO APICAL MERISTEM PROTEIN
1ut7_B2e-51418816171NO APICAL MERISTEM PROTEIN
4dul_A2e-51418816171NAC domain-containing protein 19
4dul_B2e-51418816171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321475.21e-173NAC domain-containing protein 92
RefseqXP_011009316.11e-173PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ22e-76NC100_ARATH; NAC domain-containing protein 100
TrEMBLB9IE381e-172B9IE38_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03700.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-104NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]