PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10822_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 1004aa MW: 110041 Da PI: 4.8622

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10822_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	600	651	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Neem_10822_f_1 600 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 651 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.745	590	671	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	603	651	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.86E-23	899	988	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-25	901	983	No hit	No description
PROSITE profile	PS51745	24.201	904	986	IPR000270	PB1 domain
SMART	SM00666	2.6E-25	904	986	IPR000270	PB1 domain
Pfam	PF00564	4.2E-19	905	985	IPR000270	PB1 domain
CDD	cd06407	2.26E-32	905	985	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MEYPFSAKEK GTGYWVSPRA QMENSALLDC GTRSSFNEDL FNNFSELMNF DAYAGWCNSP 60 SATDQMFASY GLSSFQSIPY ASFDTSNLVA SNSSAVLDGS GTSNALGSSY NCGDRMDFQQ 120 TSTDPCCPPD ANDADDLVQK QSSVVYHDNN MSDVSNCLVS RPVPRSLDEK MLRALSVFKE 180 SAGGGILAQV WIPIKHGDQI ILTTSDQPYL LDQMLAGYRE VSRTFTFSAE VKPGSFLGLP 240 GRVFSSKVPE WTSNVIYYNE AEYIRVTHAV NHAVRSSIAL PVFHDPEMTC CAVLEIVSMK 300 EKPNFDSDME NICSALQAVN LRTTTPPHLL PQCISRNQKA ALAEITDVLR AVCHAHTLPL 360 ALTWIPCNYN EEAINEIIKV RVKGGNASSD GKNVLCIEDS ACYVNDRDME GFVHACYEHY 420 LEEGQGIAGK ALQSNHPFFF PDVKLYDITE YPLVHHARKF GLNAAVAIRL RSTYTGDDDY 480 ILEFFLPVTM KGSSEQQLLL NNLSGTMQRI CQSLRTVSSA ELDQDEGSKF GFQNGVVPNF 540 PSMGMPRTSS VTALSDSDLN SMDKMTLNVS DSKNGLEAVG SSEQVMNGPR RHMEKKRSTA 600 EKNVSLSVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLRKIQT 660 VLDSVQGVEG GLKFDPTTGG FVAASSIIQE FGARKGFLLP EKSLPRRNPE TITEDSTSLA 720 PTLCTDGEKT VVKVEEDERS MDTNQVAQLK NMLIPNISEG ELNQSSVNPI DCSEDSKLVS 780 KDAGPFQPAR LGTAAWLSPE NASMGSYFAR GKWAALNKDS LKLESSDCQF VSQSSYSFAA 840 AEDIDTRMEG DDGIIEQNQP TTSSMTESSN GSGSLVHGSS SSSPSFEEGK HSKIQPSSCD 900 SGSKITVKAT YKEDIIRFKF DPSVGCFQLY EEVGKRLKLQ NGTFQLKYLD DEEEWVMLVS 960 DSDLQECLEI LDSIGTRSVK FLVRDVPCAV GSSGSSNCFL AGIS

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MEYPFSAKEK GTGYWVSPRA QMENSALLDC GTRSSFNEDL FNNFSELMNF DAYAGWCNSP  60
SATDQMFASY GLSSFQSIPY ASFDTSNLVA SNSSAVLDGS GTSNALGSSY NCGDRMDFQQ  120
TSTDPCCPPD ANDADDLVQK QSSVVYHDNN MSDVSNCLVS RPVPRSLDEK MLRALSVFKE  180
SAGGGILAQV WIPIKHGDQI ILTTSDQPYL LDQMLAGYRE VSRTFTFSAE VKPGSFLGLP  240
GRVFSSKVPE WTSNVIYYNE AEYIRVTHAV NHAVRSSIAL PVFHDPEMTC CAVLEIVSMK  300
EKPNFDSDME NICSALQAVN LRTTTPPHLL PQCISRNQKA ALAEITDVLR AVCHAHTLPL  360
ALTWIPCNYN EEAINEIIKV RVKGGNASSD GKNVLCIEDS ACYVNDRDME GFVHACYEHY  420
LEEGQGIAGK ALQSNHPFFF PDVKLYDITE YPLVHHARKF GLNAAVAIRL RSTYTGDDDY  480
ILEFFLPVTM KGSSEQQLLL NNLSGTMQRI CQSLRTVSSA ELDQDEGSKF GFQNGVVPNF  540
PSMGMPRTSS VTALSDSDLN SMDKMTLNVS DSKNGLEAVG SSEQVMNGPR RHMEKKRSTA  600
EKNVSLSVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLRKIQT  660
VLDSVQGVEG GLKFDPTTGG FVAASSIIQE FGARKGFLLP EKSLPRRNPE TITEDSTSLA  720
PTLCTDGEKT VVKVEEDERS MDTNQVAQLK NMLIPNISEG ELNQSSVNPI DCSEDSKLVS  780
KDAGPFQPAR LGTAAWLSPE NASMGSYFAR GKWAALNKDS LKLESSDCQF VSQSSYSFAA  840
AEDIDTRMEG DDGIIEQNQP TTSSMTESSN GSGSLVHGSS SSSPSFEEGK HSKIQPSSCD  900
SGSKITVKAT YKEDIIRFKF DPSVGCFQLY EEVGKRLKLQ NGTFQLKYLD DEEEWVMLVS  960
DSDLQECLEI LDSIGTRSVK FLVRDVPCAV GSSGSSNCFL AGIS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442936.1	0.0	protein NLP9 isoform X2
Refseq	XP_015386041.1	0.0	protein NLP9-like isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A173G8J7	0.0	A0A173G8J7_PONTR; Transcription factor NLP8
STRING	XP_006478830.1	0.0	(Citrus sinensis)
STRING	XP_006442937.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]