PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10795_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 379aa MW: 42946.2 Da PI: 7.9711 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.5 | 1.9e-51 | 14 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ppGfrFhP+deel+v+yL++k++++++++ +vi+evdiyk++Pw+Lpkk+ +e+ewyfFs+rd+ky++g+r+nra+ +gyWkatg+dk++ls Neem_10795_f_2 14 PPGFRFHPSDEELIVHYLQNKAASRPVPA-SVIAEVDIYKYNPWELPKKALFGEDEWYFFSPRDRKYPNGERPNRAAGTGYWKATGTDKPILSCF 107 9***************************9.99***************88888999***************************************9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g++ g+kk Lvfy+gr p+g+ktdW+m+eyrl Neem_10795_f_2 108 GSKLGVKKALVFYTGRPPRGVKTDWMMNEYRL 139 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-62 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.324 | 13 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-25 | 14 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEIRENNPLR FQFPPGFRFH PSDEELIVHY LQNKAASRPV PASVIAEVDI YKYNPWELPK 60 KALFGEDEWY FFSPRDRKYP NGERPNRAAG TGYWKATGTD KPILSCFGSK LGVKKALVFY 120 TGRPPRGVKT DWMMNEYRLA DTIIRPSRSK GSMRLDDWVL CRVRLKGNIP TRACGIQDTH 180 RAELESYSTK IEEAVPTPAY TNNNNNADMI RDCLNKDCRL LASILAGQAL PPIQTVSTLS 240 CQGSSNGNSS TSIVFEDGIA DKVNSPLTLS SLDTYFNPLK RKPNEENNYE NLLPSNKTLN 300 CDNRDQVLSF SKALLNNNIN YYGQCQEGIY TNPSDPFIDF QEDSAGSERN NELRGHHTVD 360 PGSKNKTSFW MPVEMNRGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-72 | 1 | 166 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-72 | 1 | 166 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-72 | 1 | 166 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-72 | 1 | 166 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-72 | 1 | 166 | 4 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-72 | 1 | 166 | 4 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424612.1 | 1e-179 | NAC domain-containing protein 68 | ||||
Swissprot | K4BNG7 | 6e-80 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | V4SBG4 | 1e-177 | V4SBG4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424612.1 | 1e-178 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17984 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-79 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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