PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10612_f_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26324.1 Da PI: 7.033 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.9e-08 | 21 | 64 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W Ed+ + da + + +W +Ia++++ g+++ ++k+++ Neem_10612_f_5 21 HWNRSEDKVFEDALVTVPEDcpdRWQKIASKLP-GKSPRDVKEHY 64 5999**************99*************.**********9 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.9e-14 | 114 | 158 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Neem_10612_f_5 114 PWTEEEHKLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 158 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.397 | 14 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-11 | 16 | 68 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-7 | 18 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-6 | 21 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 21 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-7 | 22 | 68 | No hit | No description |
PROSITE profile | PS51294 | 20.157 | 107 | 163 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-17 | 109 | 163 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-17 | 110 | 162 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 111 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-11 | 111 | 161 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 114 | 158 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.07E-10 | 114 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MYQQDINSNS FPMTQSSSTT HWNRSEDKVF EDALVTVPED CPDRWQKIAS KLPGKSPRDV 60 KEHYEALVHD VSEIDSGRVE LPSYPDDSDW DSPAQISFAP KHKHGEPERK KGTPWTEEEH 120 KLFLIGLSKF GKGDWRSISR NVVVTRTPTQ VASHAQKYFL RQSNGAKRER KRSSIHDITT 180 VDNSSVGVPI DQNWIPSPGG AGHQQPPALQ QFPPPSQFPS QGGSLGYQNY GFPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-15 | 22 | 84 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445756.2 | 1e-135 | transcription factor SRM1 | ||||
Refseq | XP_006485458.1 | 1e-135 | transcription factor SRM1 | ||||
Swissprot | Q8S9H7 | 2e-57 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2H5PNP1 | 1e-135 | A0A2H5PNP1_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U9T9 | 1e-135 | V4U9T9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006445756.1 | 1e-136 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-71 | MYB family protein |
Publications ? help Back to Top | |||
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