PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10585_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Protein Properties

Length: 390aa MW: 43953.2 Da PI: 6.3588

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10585_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.5	2.1e-17	93	183	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++ps+v+ +l lpkkf+++h k +++ + lede+g ++e ++ + + l++GW++F ++L egD++vF+l++ f+++v Neem_10585_f_2 93 FIKCMLPSHVSGGFWLGLPKKFCTDHLPK--KDTIIALEDENGHEYETNY--LAEK--IGLSGGWRGFSMVHKLVEGDVLVFHLIR--PFKFKVY 179 89**********************533..5679***********..4444..44*********************998..7777888 PP EE-S CS B3 96 vfrk 99 + r+ Neem_10585_f_2 180 ISRS 183 8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-20	87	184	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-23	88	187	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.13E-27	91	182	No hit	No description
PROSITE profile	PS50863	12.492	93	184	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-15	93	182	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-21	93	184	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MAIAPNERES SSDSPSEVKR ARPPIKKENM LDSKKVICSG PENSKCNATV ICSSEKRKRA 60 TYDNLYDNEE TKSAVMMQAT HVQANLAPEF PSFIKCMLPS HVSGGFWLGL PKKFCTDHLP 120 KKDTIIALED ENGHEYETNY LAEKIGLSGG WRGFSMVHKL VEGDVLVFHL IRPFKFKVYI 180 SRSRGSDEVD GALGLLQLDV CHRQMHYEKH TSLCKEEKDK YWEPLPQDIP QITLEKDNHM 240 ICSNIIQRAS DQSEDDSKNP GLLDGLNCRL AAGMISETIN IADAIRASKL TTPPDNFAIW 300 DKTLKAFKLM GMNVGFLQAR LDQLMNLSSK SRRCEEARLE RTNAEEEKRI LELKLSEVSG 360 RIYKLDSEIG VLEVNSDGLD VMFQELAKAP

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MAIAPNERES SSDSPSEVKR ARPPIKKENM LDSKKVICSG PENSKCNATV ICSSEKRKRA  60
TYDNLYDNEE TKSAVMMQAT HVQANLAPEF PSFIKCMLPS HVSGGFWLGL PKKFCTDHLP  120
KKDTIIALED ENGHEYETNY LAEKIGLSGG WRGFSMVHKL VEGDVLVFHL IRPFKFKVYI  180
SRSRGSDEVD GALGLLQLDV CHRQMHYEKH TSLCKEEKDK YWEPLPQDIP QITLEKDNHM  240
ICSNIIQRAS DQSEDDSKNP GLLDGLNCRL AAGMISETIN IADAIRASKL TTPPDNFAIW  300
DKTLKAFKLM GMNVGFLQAR LDQLMNLSSK SRRCEEARLE RTNAEEEKRI LELKLSEVSG  360
RIYKLDSEIG VLEVNSDGLD VMFQELAKAP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021652673.1	1e-130	B3 domain-containing protein Os01g0234100-like
TrEMBL	V4S779	1e-146	V4S779_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006423042.1	1e-147	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16718	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-42	B3 family protein