PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10532_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 526aa MW: 59349.5 Da PI: 8.2094

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10532_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3.1e-07	73	94	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f++ G+C+ GdrC+F Hg Neem_10532_f_3 73 VPCYFYFN-GFCNKGDRCSFLHG 94 79****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.892	20	46	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.97	22	45	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.15	69	96	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	69	94	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	70	95	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.2E-5	73	94	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-5	74	95	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MMLFPFQGID CEYRHNEVAR LNPRECWYWL SGNCLNPTCG FRHPPLEGHA TETPSESAAL 60 PCQSSIPMNK TSVPCYFYFN GFCNKGDRCS FLHGLDGSAA TAKPSKPAGA SKNALHSENK 120 TSGGNGAGSA PTETHPSPSE TTSKQAVHVR VQPNNDLLES STRSIPQQSA SLQRYLSESE 180 EAAVIKSDSI TLNKGFMKTK CYLYTDLSSE EQVDDRIGPE GRWESSLGFD VLVDNDNRPE 240 NLGYKDDPEY LLAINEDYRE LSGHLMRYDS EDPIGYVPVY HDAEPYEFET YNAHDYLDNQ 300 DILDDVTEHP SRSRGRMLDS ILSRKRKLLP MKLAVDDRVM DLRDVLRKRR VVDGHSVIHS 360 SRKHGSSRLV GQIKKRLGGH VMSQRLQRRL ASEFGANYIK SHGNKGIVLK RANWQGWPRP 420 SKCTMLRQHY KEKRSASRRS DISVISREPF SRERRSSQFS TTFIGPKSLA EIKEEKKKAE 480 GNGDCLGEMG NSTRILVDFQ GPKPLSEILK EKRRLDTIRD GDPSTE

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MMLFPFQGID CEYRHNEVAR LNPRECWYWL SGNCLNPTCG FRHPPLEGHA TETPSESAAL  60
PCQSSIPMNK TSVPCYFYFN GFCNKGDRCS FLHGLDGSAA TAKPSKPAGA SKNALHSENK  120
TSGGNGAGSA PTETHPSPSE TTSKQAVHVR VQPNNDLLES STRSIPQQSA SLQRYLSESE  180
EAAVIKSDSI TLNKGFMKTK CYLYTDLSSE EQVDDRIGPE GRWESSLGFD VLVDNDNRPE  240
NLGYKDDPEY LLAINEDYRE LSGHLMRYDS EDPIGYVPVY HDAEPYEFET YNAHDYLDNQ  300
DILDDVTEHP SRSRGRMLDS ILSRKRKLLP MKLAVDDRVM DLRDVLRKRR VVDGHSVIHS  360
SRKHGSSRLV GQIKKRLGGH VMSQRLQRRL ASEFGANYIK SHGNKGIVLK RANWQGWPRP  420
SKCTMLRQHY KEKRSASRRS DISVISREPF SRERRSSQFS TTFIGPKSLA EIKEEKKKAE  480
GNGDCLGEMG NSTRILVDFQ GPKPLSEILK EKRRLDTIRD GDPSTE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475812.1	0.0	zinc finger CCCH domain-containing protein 34-like
Refseq	XP_006475813.1	0.0	zinc finger CCCH domain-containing protein 34-like
TrEMBL	A0A2H5PDZ6	0.0	A0A2H5PDZ6_CITUN; Uncharacterized protein
STRING	XP_006475812.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16432	7	10