PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10532_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 533aa MW: 60195.4 Da PI: 7.6581

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10532_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.6e-06	88	111	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++ G C+ GdrC+F Hgp Neem_10532_f_1 88 RVPCFFYFN-GLCNKGDRCSFLHGP 111 678888888.*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.352	5	34	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	3.9E-12	5	75	No hit	No description
SMART	SM00356	0.014	6	33	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.596	36	62	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.61	38	61	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.812	85	112	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.41E-6	85	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-4	86	111	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-5	90	113	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MEELQKRNTD CVYFLASPLT CKKGIDCEYR HNDVARLNPR DCWYWLSGNC INPTCSFRHP 60 PLDGHATKVP SEFASLPDQS SVVVNKTRVP CFFYFNGLCN KGDRCSFLHG PNDSAPAGKP 120 SKAAAATNDA LQSENKSSGG NGTGSAPTET HPNPAVITSN QAVDTIVRTK VGILHSSPRS 180 FPQRSASPPV SLSDCEEAAV INSDFMPPLE GLMKSKSHLS TDWSPEEQVD DHIEPEGRRE 240 LSPEFDVLLN NDNMSENLGY EDDPEYLLAI NREHRELNGH LLCYDFEDAI EYEPMYPDDA 300 CNCLDNNQHV LDDFSEHPSN SKGRILDSIL SRKRKLLPMK LAVANRNVDL RDYLRKRRLV 360 DGHLVIHSSR RRQSSRLIGR SQERPQGLVV NQRLHRILAS EFGENYIKSN ENKGTFLKRA 420 NRQGWPRHSK SNMLRQGYKE KRRACKEFDR LVISREPFSG ERTSSQISST FTGPKTLAEI 480 KEGKKKAEEN GDCFGEMRNS TRMSVDFQGP KPLNEILKEK RRLDTVREGD SVS

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MEELQKRNTD CVYFLASPLT CKKGIDCEYR HNDVARLNPR DCWYWLSGNC INPTCSFRHP  60
PLDGHATKVP SEFASLPDQS SVVVNKTRVP CFFYFNGLCN KGDRCSFLHG PNDSAPAGKP  120
SKAAAATNDA LQSENKSSGG NGTGSAPTET HPNPAVITSN QAVDTIVRTK VGILHSSPRS  180
FPQRSASPPV SLSDCEEAAV INSDFMPPLE GLMKSKSHLS TDWSPEEQVD DHIEPEGRRE  240
LSPEFDVLLN NDNMSENLGY EDDPEYLLAI NREHRELNGH LLCYDFEDAI EYEPMYPDDA  300
CNCLDNNQHV LDDFSEHPSN SKGRILDSIL SRKRKLLPMK LAVANRNVDL RDYLRKRRLV  360
DGHLVIHSSR RRQSSRLIGR SQERPQGLVV NQRLHRILAS EFGENYIKSN ENKGTFLKRA  420
NRQGWPRHSK SNMLRQGYKE KRRACKEFDR LVISREPFSG ERTSSQISST FTGPKTLAEI  480
KEGKKKAEEN GDCFGEMRNS TRMSVDFQGP KPLNEILKEK RRLDTVREGD SVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475812.1	0.0	zinc finger CCCH domain-containing protein 34-like
Refseq	XP_006475813.1	0.0	zinc finger CCCH domain-containing protein 34-like
TrEMBL	A0A2H5PDZ6	0.0	A0A2H5PDZ6_CITUN; Uncharacterized protein
STRING	XP_006475812.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16432	7	10