PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10527_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 262aa MW: 29408.3 Da PI: 4.7874

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10527_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.7	7.6e-20	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v+ +G g+W+++ar g++Rt+k+c++rw++yl Neem_10527_f_1 24 KGPWTAEEDSLLMNYVAIHGEGRWNSVARSAGLKRTGKSCRLRWLNYL 71 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.201	19	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-22	21	74	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-16	23	73	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-18	24	71	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.32E-22	25	98	IPR009057	Homeodomain-like
CDD	cd00167	3.23E-13	26	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.8E-4	75	97	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEAHVGGFSS VNQQREEEIL GVRKGPWTAE EDSLLMNYVA IHGEGRWNSV ARSAGLKRTG 60 KSCRLRWLNY LRPDVRRGDI SLREQLLILE LHSRWGNSKQ FRDAMRYVWM PRLIERIQAT 120 TDSYSAGQPT YANGSPRNHA GISTSEVYHS NESGSDPIFV PEISGASSDS LDAQVSPGSD 180 LTDCYNLHGG YSSYTDNSQN RSGLCTDNVS ELWGLSKPGM DIQGFEQNNN HNGWLGGGDS 240 LENMWNEENI WFLQQQLCDD EV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-13	1	97	1	99	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444559.1	1e-105	transcription factor MYB78
TrEMBL	A0A2H5NXN7	1e-103	A0A2H5NXN7_CITUN; Uncharacterized protein
TrEMBL	V4VWU3	1e-103	V4VWU3_9ROSI; Uncharacterized protein
STRING	XP_006444559.1	1e-104	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47190.1	8e-50	myb domain protein 2