PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10484_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 34427.3 Da PI: 6.5097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.6 | 3.6e-51 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd++ k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + Neem_10484_f_1 15 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIREVDLNKLEPWDIQDKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKII 108 69****************************.9***************954444122455************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s + + +gl+ktLvfykgrap+g+k+dW+mheyrl Neem_10484_f_1 109 YS-GFRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 143 **.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-54 | 10 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.96 | 15 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MQEDMNLSIN GQSQVPPGFR FHPTEEELLH YYLRKKVAYE KIDLDVIREV DLNKLEPWDI 60 QDKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKIIYS GFRRIGLRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDESNHDI NERFIHLPRL DSPTLPSIPI SNSPFDQDRM 180 FKSCYQSVDD ILTETEPANS VHQENKAGPN DWVTLDRLVA SQLNGQVDNT SKQLSCFTEA 240 NAVFSSLCPS DDIQISHLNT SVQRSNQGST QVYSNENDLW SSFTKSASSP SSSDPLCHLS 300 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-45 | 12 | 145 | 14 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-45 | 12 | 145 | 14 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-45 | 12 | 145 | 14 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-45 | 12 | 145 | 14 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-45 | 12 | 145 | 17 | 147 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 12 | 145 | 17 | 147 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 12 | 145 | 17 | 147 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 12 | 145 | 17 | 147 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 12 | 145 | 17 | 147 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 12 | 145 | 17 | 147 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 12 | 145 | 17 | 147 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 12 | 145 | 17 | 147 | NAC domain-containing protein 19 |
3ulx_A | 2e-45 | 11 | 143 | 11 | 140 | Stress-induced transcription factor NAC1 |
4dul_A | 2e-45 | 12 | 145 | 14 | 144 | NAC domain-containing protein 19 |
4dul_B | 2e-45 | 12 | 145 | 14 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039213.1 | 1e-108 | PREDICTED: NAC domain-containing protein 43-like isoform X2 | ||||
TrEMBL | A0A0B0MYV8 | 1e-114 | A0A0B0MYV8_GOSAR; NAC domain-containing 43-like protein | ||||
STRING | XP_006476276.1 | 1e-104 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32770.1 | 2e-83 | NAC domain containing protein 12 |