PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10469_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 257aa MW: 27775.1 Da PI: 9.2993 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.6e-39 | 13 | 73 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Neem_10469_f_1 13 PEAPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 73 67889*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 1 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.6E-33 | 16 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.665 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 19 | 55 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MADRARLAKV PQPEAPLKCP RCDSTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRNV 60 PVGGGCRRNK KNKSSSSKSV VNTEKQISSN STSALPSEII GHLPQQTPQL PLMTSLHTLS 120 QYNLGNLGLS FGGIQAQIGA SSVGSSHTDV GFQIASNSSM SSAIFSAGGV QQFPFFEPPP 180 TGLYPFQSEG IEASSSIVGS MTSNSRVSEQ APVKMEDPQG LNSSRQFMGI AENNQYWSAN 240 NWTDLPGLNC SSANHLL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021660830.1 | 1e-130 | dof zinc finger protein DOF2.2-like | ||||
TrEMBL | A0A2C9V0Z2 | 1e-122 | A0A2C9V0Z2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029949m | 1e-129 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 6e-50 | OBF-binding protein 3 |