PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10451_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 296aa MW: 33030.4 Da PI: 8.9751

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10451_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.6	1.3e-13	192	236	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++r rrk+kNRe+A rsR+RK+a+ eL kv Le+ N +Lkke Neem_10451_f_1 192 DRRLRRKIKNRESAARSRARKQAYHNELVGKVSRLEEDNLKLKKE 236 6899***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.1E-11	189	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.289	191	236	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.3E-12	192	237	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.20E-16	193	235	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-11	193	237	No hit	No description
SuperFamily	SSF57959	6.25E-11	193	238	No hit	No description
PROSITE pattern	PS00036	0	196	211	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGSQSNGQQS HLQPSSLVRQ NSWYSLTLNE VENQLRDVGK PLGSMNLDEL LQSVWNTEEN 60 QSMGMGVENT SSSSSLQWQA SLTLARALSG KTVDQVWKEI QQGQKRRYGE EVKSFQTEPT 120 LGEITLEDFL VQAGLFAEAS ITPMDLEAVG VVTPQSFPQQ IGLSPSPSTG TVSNTVTSGR 180 KRDADAIEKS IDRRLRRKIK NRESAARSRA RKQAYHNELV GKVSRLEEDN LKLKKEKGSI 240 LLITGLMEKG KHEFFPFLLL FLCGHFVGQE PEISYFPKIL GFRQGFIFKH DGGNLA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006470425.1	1e-129	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X3
Refseq	XP_024046120.1	1e-129	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Refseq	XP_024951152.1	1e-129	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	1e-52	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2H5PEP7	1e-127	A0A2H5PEP7_CITUN; Uncharacterized protein
TrEMBL	V4U6F2	1e-127	V4U6F2_9ROSI; Uncharacterized protein
STRING	XP_006446407.1	1e-128	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16714	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-38	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]