PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10430_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | G2-like | ||||||||
Protein Properties | Length: 320aa MW: 35467.4 Da PI: 7.8143 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.2 | 1.9e-28 | 56 | 107 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLG +AtPk+i+++m+vkgLtl h+kSHLQkYRl Neem_10430_f_3 56 KPRLRWTADLHDRFVDAVTQLG---EATPKAIMRTMNVKGLTLFHLKSHLQKYRL 107 79*******************4...79***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.524 | 53 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 53 | 108 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-14 | 56 | 109 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-21 | 56 | 108 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-8 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-16 | 126 | 171 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MIDELSLNCE KFMYTARMIQ GREGVHEEIH GYHHIQNLNR RGGIGEACVV MTSDPKPRLR 60 WTADLHDRFV DAVTQLGEAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKEMGDSPK 120 DGRAFEVKEA LRAQMEVQSK LHLQVEAEKH LQIRQDAQRR YLAMLDRACK MLSDQFIGGT 180 VVNADSEKCQ GLGTKMPRTY ILDQLGFYTA QSLDVAEVHC LEDDVLPNLH TQRADCSTES 240 CLTSHESSGG LKLKGSPGAG KNRILSLDST TATLLWGEAK IGTQEINLAQ VNPQGITGSL 300 EGGCRQMEKA LGSTKNGSFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-15 | 56 | 109 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-15 | 56 | 109 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-15 | 56 | 109 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-15 | 56 | 109 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467240.1 | 1e-151 | protein PHR1-LIKE 3-like | ||||
TrEMBL | A0A2H5N666 | 1e-149 | A0A2H5N666_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TRR7 | 1e-149 | V4TRR7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006467240.1 | 1e-150 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17085 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 7e-54 | G2-like family protein |