PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10415_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Protein Properties

Length: 295aa MW: 33599.2 Da PI: 8.5488

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10415_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.2	3.8e-10	98	164	1	62
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvlt 62 f+k+l +sdv++ gr+v+pkkfae++ +++++++ + ++d + + W++k+++ ++++++y+++ Neem_10415_f_2 98 FEKQLQNSDVSSAGRIVIPKKFAETNlpILNEKGGFWMNFNDMDYpQIWTFKFRFwpNNRGRMYLFE 164 99************************7778899***6666*****99655555557765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.4E-16	95	214	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-12	96	164	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.45E-12	96	229	No hit	No description
SMART	SM01019	0.0068	98	194	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-7	98	164	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MVIISEFGDV VLTPGKPATG DQVNQGGGNR EPPAAGSSRN CEYRRRASRR QNHRFAPDNP 60 LVFQHRLPRL PLQPPPAPPV RLYFSLQEIN PFVMRFLFEK QLQNSDVSSA GRIVIPKKFA 120 ETNLPILNEK GGFWMNFNDM DYPQIWTFKF RFWPNNRGRM YLFENASGLK SPASSQSSTF 180 LLLNAMQLIC CFTENLPGEF TRKYCLELGD YLMVFKDDIN GAYLVRARKK AAYVPNGAMG 240 NNANASYPNM EKYLRYGDNN NNQHDFRDGP TPDYAHLVMT PCCESLDLDL SEFLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	6e-27	94	231	1	107	B3 domain-containing transcription factor FUS3
6j9b_D	6e-27	94	231	1	107	B3 domain-containing transcription factor FUS3
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438851.2	5e-71	uncharacterized protein LOC18043546
Refseq	XP_015387151.1	5e-71	uncharacterized protein LOC107177608
TrEMBL	A0A2H5N9Q5	1e-73	A0A2H5N9Q5_CITUN; Uncharacterized protein
STRING	XP_006438851.1	4e-70	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22753	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26790.1	7e-29	B3 family protein