PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10330_f_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 487aa MW: 52360.2 Da PI: 9.2438 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.1 | 4.6e-11 | 61 | 85 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+rC+++H++ Neem_10330_f_5 61 VPDCVYYMRTGVCGYGNRCRYNHPR 85 689********************96 PP | |||||||
2 | zf-CCCH | 44.8 | 2.1e-14 | 104 | 130 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+f+++tGtCk+G++CkF+H++ Neem_10330_f_5 104 PGEPLCQFYMKTGTCKFGASCKFHHPK 130 589**********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.6e-12 | 152 | 177 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Neem_10330_f_5 152 GEKECSYYLKTGQCKFGITCKFHHPQ 177 7899********************97 PP | |||||||
4 | zf-CCCH | 36.1 | 1.1e-11 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+++H++ Neem_10330_f_5 308 PGEPDCQYYLKTGDCKFGSSCRYHHPR 334 5789*********************96 PP | |||||||
5 | zf-CCCH | 36.6 | 7.4e-12 | 355 | 380 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++++G Ck+G++CkF H++ Neem_10330_f_5 355 GVQPCSFYLQNGRCKFGATCKFDHPM 380 6789********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.446 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-5 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-8 | 61 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 62 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 64 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.539 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-8 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-11 | 105 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 108 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-6 | 152 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-9 | 152 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 156 | 176 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.929 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-6 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-9 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 312 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 313 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.234 | 353 | 381 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 353 | 384 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-9 | 355 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 357 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MELYGRNNTA RNGSQSGHQP KWSPAGQTTG LEGTVYFIVT VESMWQLDLK VPESYPERHG 60 VPDCVYYMRT GVCGYGNRCR YNHPRNRAAV EAAVRATGEY PDRPGEPLCQ FYMKTGTCKF 120 GASCKFHHPK HHPGGSLSHV PMNTYGYPLR PGEKECSYYL KTGQCKFGIT CKFHHPQPAG 180 TSVPASAPQF YPPVQSPSVP MAEQYGGAST NMRVARPPVL ASSYVQGPYG PVMFPPGVVP 240 FSGWSPYSAP VSPVLSPGAQ PAVRPTSLYG VTQLSSSMPA LAGPYPSLPS SAGPSSSGQK 300 EQSFPERPGE PDCQYYLKTG DCKFGSSCRY HHPRDRVLPR ANCVLSPLGL PMRPGVQPCS 360 FYLQNGRCKF GATCKFDHPM GAMRYSPSAS SLIESPVTPY PVGSLLSTMA PASSSSDLRP 420 ELISGSKKDS LLSRIPSSGS TSSSSIGLIF SQTGSVPLSD LQLSGQSSVP LSSSRSTRQG 480 VEVRRSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444253.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Refseq | XP_006479891.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A067HHC8 | 0.0 | A0A067HHC8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NMH0 | 0.0 | A0A2H5NMH0_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TAY9 | 0.0 | V4TAY9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479891.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444253.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5912 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |