PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10226_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 25461.6 Da PI: 8.1909 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.6e-18 | 37 | 90 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ F + + ++ ++ +LAk+lgL+ rqV +WFqN+Ra++k Neem_10226_f_1 37 TRRFSDEQIRLLETIFVSeSTKLEPMKKLQLAKELGLQPRQVAIWFQNKRARWK 90 468**************88**********************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.5 | 7.5e-38 | 36 | 126 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + rr+s+eq++lLE+ F +e+ kLep +K +la+eLglqprqva+WFqn+RAR+k+kq+E+dy++Lk++yd l+++ e+L+ke+++L +e+ Neem_10226_f_1 36 NTRRFSDEQIRLLETIFVSEStKLEPMKKLQLAKELGLQPRQVAIWFQNKRARWKSKQIEQDYAKLKANYDCLASRFESLKKEKDTLLAEV 126 579**************99888****************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.84E-17 | 22 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.212 | 31 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-16 | 34 | 96 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 37 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.3E-15 | 37 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.81E-14 | 38 | 93 | No hit | No description |
PRINTS | PR00031 | 7.9E-6 | 63 | 72 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.9E-6 | 72 | 88 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.7E-13 | 92 | 126 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MESFREDSAA SSAEANSETF TFPVHLQKKK KIKSKNTRRF SDEQIRLLET IFVSESTKLE 60 PMKKLQLAKE LGLQPRQVAI WFQNKRARWK SKQIEQDYAK LKANYDCLAS RFESLKKEKD 120 TLLAEVLNEQ MGSYTGSLEK GNIKCELGAS KLSFMEELQE NNINSVGIGQ YGNEGHEFIN 180 VERINNDSVV SSEKWFGNGG GSFNSGGLLD PSTSSGSQWL NFWPV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021805522.1 | 4e-57 | homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | Q9M276 | 2e-38 | ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | Q9XH73 | 2e-55 | Q9XH73_PRUAR; Homeobox leucine zipper protein | ||||
STRING | EMJ19568 | 2e-55 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17513 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 8e-40 | homeobox 7 |
Publications ? help Back to Top | |||
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