PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10216_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 319aa    MW: 36566.2 Da    PI: 4.3624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10216_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-1688135354
             AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     ykGVr+++ +g++ AeIrd +     r  r++lg+f taeeAa a+ + ++++e
  Neem_10216_f_1  88 YKGVRRRP-WGKYSAEIRDpF-----RrVRIWLGTFNTAEEAASAYRKKKLEFE 135
                     9*******.**********66.....45*******************9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-2187134IPR001471AP2/ERF domain
SMARTSM003806.5E-1787141IPR001471AP2/ERF domain
PROSITE profilePS5103218.99387147IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-1687134IPR016177DNA-binding domain
CDDcd000182.74E-2188127No hitNo description
PRINTSPR003673.7E-108899IPR001471AP2/ERF domain
PfamPF008471.7E-988135IPR001471AP2/ERF domain
PRINTSPR003673.7E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MRKIRIMCRD PEATDSSSED DECNNSKRNQ FRGAKRFVVE ISLPVPLPGF PSETCGDNAS  60
NHNDSQSKSY VDNKFDENKQ TQRSSTMYKG VRRRPWGKYS AEIRDPFRRV RIWLGTFNTA  120
EEAASAYRKK KLEFESMLGP QKDKNLSIAS TFMPEEATEL FSPPSPSSVL DVTASTQLGN  180
ELGNPIKEET GDDDKFLKEC YVGNFAEECS GKKIGKEANA EEIRKLCDVE QQYEEEESIA  240
YLLETPHLSP STTKELGLVD HFMQQRTDYE QIYDDYSYNY WEDPSDYELE NDQMSEFSNF  300
QPTLEDFAWA DGTLNLTCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440961.11e-110ethylene-responsive transcription factor ERF118
RefseqXP_006485784.11e-110ethylene-responsive transcription factor CRF6-like
TrEMBLA0A2H5PM391e-109A0A2H5PM39_CITUN; Uncharacterized protein
TrEMBLV4TWD51e-109V4TWD5_9ROSI; Uncharacterized protein
STRINGXP_006485784.11e-110(Citrus sinensis)
STRINGXP_006440961.11e-110(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.15e-20ERF family protein