PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_10216_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 36566.2 Da PI: 4.3624 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2e-16 | 88 | 135 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 ykGVr+++ +g++ AeIrd + r r++lg+f taeeAa a+ + ++++e Neem_10216_f_1 88 YKGVRRRP-WGKYSAEIRDpF-----RrVRIWLGTFNTAEEAASAYRKKKLEFE 135 9*******.**********66.....45*******************9999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-21 | 87 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-17 | 87 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.993 | 87 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-16 | 87 | 134 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.74E-21 | 88 | 127 | No hit | No description |
PRINTS | PR00367 | 3.7E-10 | 88 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 88 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MRKIRIMCRD PEATDSSSED DECNNSKRNQ FRGAKRFVVE ISLPVPLPGF PSETCGDNAS 60 NHNDSQSKSY VDNKFDENKQ TQRSSTMYKG VRRRPWGKYS AEIRDPFRRV RIWLGTFNTA 120 EEAASAYRKK KLEFESMLGP QKDKNLSIAS TFMPEEATEL FSPPSPSSVL DVTASTQLGN 180 ELGNPIKEET GDDDKFLKEC YVGNFAEECS GKKIGKEANA EEIRKLCDVE QQYEEEESIA 240 YLLETPHLSP STTKELGLVD HFMQQRTDYE QIYDDYSYNY WEDPSDYELE NDQMSEFSNF 300 QPTLEDFAWA DGTLNLTCS |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440961.1 | 1e-110 | ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_006485784.1 | 1e-110 | ethylene-responsive transcription factor CRF6-like | ||||
TrEMBL | A0A2H5PM39 | 1e-109 | A0A2H5PM39_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TWD5 | 1e-109 | V4TWD5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485784.1 | 1e-110 | (Citrus sinensis) | ||||
STRING | XP_006440961.1 | 1e-110 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49120.1 | 5e-20 | ERF family protein |