PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10146_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 543aa MW: 61198 Da PI: 6.5175

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10146_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.4	6.3e-15	75	124	41	90
FAR1 41 reeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r++++++++k+rr+r+ tr gCka ++v+++++gkw+v+kle++HnHel+ Neem_10146_f_2 75 RSTDSEDDTKRRRSRPITREGCKALMTVRRKDSGKWYVAKLEKKHNHELV 124 44444557899*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-13	70	124	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.608	388	424	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-5	388	415	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-4	399	429	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MEEEGSNAAK ELVDSYVSLE DEGNECCVVE DVQAPMVVDD NSKKVEDHVN FDLSRCLAGG 60 ILEPALGMER EKRARSTDSE DDTKRRRSRP ITREGCKALM TVRRKDSGKW YVAKLEKKHN 120 HELVTPAMRQ FLRSHKQECD LSNSSSISFG SSGLGLTASL NVLSEDCNSF GKMGLAVQNT 180 VNYIGRGRLS TFGIDAKVQK VFPRSKHRYC KWHIMRKMPK EMGHVYSALP KTFQVEFDKY 240 VNKSETPEDF ESVWQLLLDK YNLRGNEWLQ SLYIDRKLWV TAYMRDTFFA GMHATQLSGN 300 FAGQYEKALD GRYEKEAKAE YETFYTKPVL KTPLPMEKQA AEVYTRKLFS VLQDEIFESL 360 VLAVKLGGSN RATSRYEVAR FDEENKVYFV VLDVSEQLAS CSCKKFELEG ILCRHDGAVT 420 DVMSSFGSQG NSQKGKSSHY DILYQEALKC AEEGMASEHS FEVALNALRE ARIKIVDAKK 480 NATNAPKLET VASTSYHDDN TTIASQVDSS SALLIPIDYQ KAKMGESCAE NSISKYAFDQ 540 SSS

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MEEEGSNAAK ELVDSYVSLE DEGNECCVVE DVQAPMVVDD NSKKVEDHVN FDLSRCLAGG  60
ILEPALGMER EKRARSTDSE DDTKRRRSRP ITREGCKALM TVRRKDSGKW YVAKLEKKHN  120
HELVTPAMRQ FLRSHKQECD LSNSSSISFG SSGLGLTASL NVLSEDCNSF GKMGLAVQNT  180
VNYIGRGRLS TFGIDAKVQK VFPRSKHRYC KWHIMRKMPK EMGHVYSALP KTFQVEFDKY  240
VNKSETPEDF ESVWQLLLDK YNLRGNEWLQ SLYIDRKLWV TAYMRDTFFA GMHATQLSGN  300
FAGQYEKALD GRYEKEAKAE YETFYTKPVL KTPLPMEKQA AEVYTRKLFS VLQDEIFESL  360
VLAVKLGGSN RATSRYEVAR FDEENKVYFV VLDVSEQLAS CSCKKFELEG ILCRHDGAVT  420
DVMSSFGSQG NSQKGKSSHY DILYQEALKC AEEGMASEHS FEVALNALRE ARIKIVDAKK  480
NATNAPKLET VASTSYHDDN TTIASQVDSS SALLIPIDYQ KAKMGESCAE NSISKYAFDQ  540
SSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975466.1	1e-176	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061EGU0	1e-172	A0A061EGU0_THECC; FAR1-related sequence 5
STRING	EOY03612	1e-173	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-65	FAR1-related sequence 5