PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10124_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 341aa MW: 37597.2 Da PI: 10.0084 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.2e-39 | 38 | 99 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss Neem_10124_f_2 38 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 99 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-29 | 24 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-33 | 40 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 42 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 44 | 80 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDTAQWPQEI VVKPIEEIVT NTCPKPPAGI ERKARPQKEQ ALNCPRCNST NTKFCYYNNY 60 SLTQPRYFCK TCRRYWTEGG SLRNIPVGGG SRKNKRSSSS SSPASSKKLP DLVTPPSNLS 120 QPSAQQNPKI HEGQDLNLAF PGTQGFRSIS ELVQGPTMEN NNKSQIPNSS STTNTTSSQL 180 SALELLTGIS SRGLNSFMPM PVPDPNSVYT PGFPMQDFKP TINFSLDGLG SGYGSLQSVQ 240 ENSTGRLLFP FEDLKQVSSN SDVEQNRDQH GDSSGYWTGM LGGGSWFEKF RDSLMKQTAR 300 ELKKKKKMKK SSQVRKSDNS HMTLLSIGTT KPAASTQKQT C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 301 | 308 | LKKKKKMK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022736728.1 | 1e-158 | dof zinc finger protein DOF4.6-like | ||||
Swissprot | Q8LAP8 | 2e-74 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A1U8NE12 | 1e-155 | A0A1U8NE12_GOSHI; dof zinc finger protein DOF4.6 | ||||
STRING | EOY23946 | 1e-154 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3433 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 8e-63 | Dof family protein |
Publications ? help Back to Top | |||
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