PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10120_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 179aa MW: 20400.7 Da PI: 9.5302

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10120_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.2e-15	79	123	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Neem_10120_f_1 79 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 123 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.421	1	22	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	1.2E-13	70	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.525	72	128	IPR017930	Myb domain
SuperFamily	SSF46689	2.09E-17	73	127	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-18	75	127	IPR006447	Myb domain, plants
SMART	SM00717	3.0E-13	76	126	IPR001005	SANT/Myb domain
CDD	cd00167	1.58E-11	79	124	No hit	No description
Pfam	PF00249	2.0E-12	79	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MIPGKTVGDV MKQYRELEED ISDIEAGLIP IPGYGNDSFT LEWVNSTQGY DGLKQFYSPG 60 GKRGTGSRSS DQERKKGVPW TEEEHRQFLM GLKKFGKGDW RNISRNFVTT RTPTQVASHA 120 QKYFNRQLTG GKDKRRSSIH DITTVNLDDT EQNLLRGTLH GSQFGAYSNY FQMQSMQHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006429310.1	1e-100	transcription factor DIVARICATA
Refseq	XP_006480971.1	1e-100	transcription factor DIVARICATA
Swissprot	Q8S9H7	2e-77	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A067EDJ9	4e-99	A0A067EDJ9_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PE95	4e-99	A0A2H5PE95_CITUN; Uncharacterized protein
TrEMBL	V4SU68	4e-99	V4SU68_9ROSI; Uncharacterized protein
STRING	XP_006480971.1	1e-100	(Citrus sinensis)
STRING	XP_006429310.1	1e-100	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1228	27	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	4e-84	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]