PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10068_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 219aa MW: 25270.7 Da PI: 10.0726 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.4 | 5.7e-36 | 49 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l pG+ F+Ptdeelv +yL +k+ g + +++ik +++y++eP++L+ + ++++++w+fF++ +kky++g++ nr++ g+Wk+tg+ +++ Neem_10068_f_2 49 LEPGMVFDPTDEELVFDYLIEKAVGGSeRGGFRFIKYIELYQHEPSQLRsLAQDSGQEKWFFFTPLQKKYQRGNNINRQVPGGFWKKTGSPSAIK 143 579****************999777773556788**************9445566888************************************* PP NAM 94 skkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ g+++ +k++L++yk+ ++++++kt+W+m+eyrl Neem_10068_f_2 144 DQAGKDIATKTSLAYYKKdkTSNQSVKTEWLMKEYRL 180 ****************7622566778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-37 | 40 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.239 | 49 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-18 | 51 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MRTFQSKVFL ISIRNVKAEV DSGGSLDSAV STVQVMIHNL FTTSCQKMLE PGMVFDPTDE 60 ELVFDYLIEK AVGGSERGGF RFIKYIELYQ HEPSQLRSLA QDSGQEKWFF FTPLQKKYQR 120 GNNINRQVPG GFWKKTGSPS AIKDQAGKDI ATKTSLAYYK KDKTSNQSVK TEWLMKEYRL 180 KNQPPNNQND EESEMLTLCR IYRSKLRGRT NRRRSDVNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-23 | 46 | 203 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-23 | 46 | 203 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-23 | 46 | 203 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-23 | 46 | 203 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-23 | 46 | 203 | 17 | 167 | NAC domain-containing protein 19 |
3swm_B | 9e-23 | 46 | 203 | 17 | 167 | NAC domain-containing protein 19 |
3swm_C | 9e-23 | 46 | 203 | 17 | 167 | NAC domain-containing protein 19 |
3swm_D | 9e-23 | 46 | 203 | 17 | 167 | NAC domain-containing protein 19 |
3swp_A | 9e-23 | 46 | 203 | 17 | 167 | NAC domain-containing protein 19 |
3swp_B | 9e-23 | 46 | 203 | 17 | 167 | NAC domain-containing protein 19 |
3swp_C | 9e-23 | 46 | 203 | 17 | 167 | NAC domain-containing protein 19 |
3swp_D | 9e-23 | 46 | 203 | 17 | 167 | NAC domain-containing protein 19 |
3ulx_A | 1e-22 | 49 | 205 | 15 | 169 | Stress-induced transcription factor NAC1 |
4dul_A | 8e-23 | 46 | 203 | 14 | 164 | NAC domain-containing protein 19 |
4dul_B | 8e-23 | 46 | 203 | 14 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437371.1 | 6e-34 | uncharacterized protein LOC18043989 isoform X1 | ||||
TrEMBL | A0A067E7E1 | 7e-33 | A0A067E7E1_CITSI; Uncharacterized protein | ||||
STRING | XP_006437371.1 | 2e-33 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18525 | 2 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 9e-27 | NAC domain containing protein 35 |