PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10066_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 558aa MW: 60566.6 Da PI: 4.8699 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 38 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ + g+ R++k+c++rw ++l Neem_10066_f_2 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 85 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 91 | 134 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l+v++++++G++ W++ a++++ gRt++++k++w++ Neem_10066_f_2 91 KGAFTQEEEQLIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 134 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.66 | 33 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-30 | 36 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-15 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 38 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 39 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-11 | 40 | 85 | No hit | No description |
PROSITE profile | PS51294 | 26.708 | 86 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-17 | 90 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 91 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-12 | 93 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-26 | 93 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MSRTTIESDD GVLSKDQIES PLNDEGGGIA GRGIALKKGP WTSAEDAILI DYVKKHGEGN 60 WNAVQKNSGL FRCGKSCRLR WANHLRPNLK KGAFTQEEEQ LIVELHAKMG NKWARMAAHL 120 PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPE VSFQVLQESQ SQNINGINSG DKGHHDILQG 180 NGYEIPDVVF DSLKANQSVL PYVPELPDIT ASSMLMKGLG SQYCSFMPPT MHRQKRLRES 240 MPLFAGYSGR IKNEFTFDQF HNDVPDKIAR PFGLSFPLEP DPTPKTPESF GVLQGSHTLS 300 NGNFSASKPT SGAVKLELPS LQYTETDLGS WGTSSSPQPL LETVDAFIQS PPPTGTVDDS 360 DCPSPRNSGL LDALLHEAKT LGCAKNHSSD KSSNSSSVTP ADIADSCTLN ICETEWEDYG 420 DPLSPLGHSA TSLFNECTPL SASGSSLEEQ APIDTLVGCK VKSEPVDQAW SPDRGKETAN 480 LYVSQPDALL ASDWLEQGSA YVKDPTIMTD AIATLLGDDL GSEYKQMTTG TSTSSQGLGL 540 GACAWNNMPA VCQMSDLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-31 | 36 | 139 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432323.2 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_006471261.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_015383648.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024040037.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024040038.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024951612.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024951613.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_024951614.1 | 0.0 | transcription factor MYB33 | ||||
TrEMBL | A0A2H5PPC7 | 0.0 | A0A2H5PPC7_CITUN; Uncharacterized protein | ||||
STRING | XP_006471261.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3802 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-144 | myb domain protein 33 |