PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy023004

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 494aa MW: 54052.8 Da PI: 4.7192

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59521653	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.3e-39	141	201	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s Ahy023004 141 PDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 201 78999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.8E-32	143	199	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	145	199	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	147	198	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	147	183	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MEDQSTVTIR DPAIKLFGQK IPLPGDPDVL PAAPMDHEQD LHEEDEEEEE EELDDDEEDG 60 ETQDTHEDKD AEAENLTTQE QEADPPPNVE EDKKSATSPE AMVNPKTPAI EEDSAKSKSD 120 KSDKEQGDTS IPQDQKPLKK PDKLLPCPRC NSMDTKFCYY NNYNVNQPRY FCKACQRYWT 180 AGGTMRNVPV GAGRRKNKNS ANHYRHITIS EALQAARIDA PNGTHLPALK SNERVLSFGI 240 DAPICDSMAS VLNLGEKKVL NGTRNGFHHG FDDQRLKVPS KSGENGEACT SSSPVAVSNP 300 MGENSKSTFQ EPMLPSNGYL PQVPCIASVP WPYPWNAAIP SPAMCPPGFP ALPFYPAAFW 360 NCSMPGNWNV PWFPPQSSPS NPKSPSSGPN SPTLGKHSRD GDTGNQDSLS KEEPPKQRNG 420 SVLVPKTLRI DDPSEAAKSS IWATLGIKNE SISGGGMFKA FQSTKEEKNQ VEASPVLRAN 480 PAALSRSLNF HESS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MEDQSTVTIR DPAIKLFGQK IPLPGDPDVL PAAPMDHEQD LHEEDEEEEE EELDDDEEDG  60
ETQDTHEDKD AEAENLTTQE QEADPPPNVE EDKKSATSPE AMVNPKTPAI EEDSAKSKSD  120
KSDKEQGDTS IPQDQKPLKK PDKLLPCPRC NSMDTKFCYY NNYNVNQPRY FCKACQRYWT  180
AGGTMRNVPV GAGRRKNKNS ANHYRHITIS EALQAARIDA PNGTHLPALK SNERVLSFGI  240
DAPICDSMAS VLNLGEKKVL NGTRNGFHHG FDDQRLKVPS KSGENGEACT SSSPVAVSNP  300
MGENSKSTFQ EPMLPSNGYL PQVPCIASVP WPYPWNAAIP SPAMCPPGFP ALPFYPAAFW  360
NCSMPGNWNV PWFPPQSSPS NPKSPSSGPN SPTLGKHSRD GDTGNQDSLS KEEPPKQRNG  420
SVLVPKTLRI DDPSEAAKSS IWATLGIKNE SISGGGMFKA FQSTKEEKNQ VEASPVLRAN  480
PAALSRSLNF HESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025618080.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-123	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A445EJD9	0.0	A0A445EJD9_ARAHY; Uncharacterized protein
STRING	GLYMA17G10920.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-104	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]