PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy022744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LSD | ||||||||
Protein Properties | Length: 146aa MW: 15186.7 Da PI: 7.7401 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41 | 3.1e-13 | 29 | 53 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Ahy022744 29 CSGCRNLLLYPVGASSVCCAVCNAV 53 ************************9 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.9e-15 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Ahy022744 68 CGGCHTLLMYIRGATSVQCSCCHTV 92 ************************9 PP | |||||||
3 | zf-LSD1 | 43.3 | 6e-14 | 106 | 130 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Ahy022744 106 CGSCRMLLMYQYGATSVKCAVCNFV 130 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 3.2E-4 | 19 | 127 | No hit | No description |
TIGRFAMs | TIGR01053 | 7.4E-13 | 26 | 56 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 5.16E-5 | 29 | 127 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.9E-10 | 29 | 53 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.2E-14 | 65 | 94 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 68 | 92 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.9E-13 | 103 | 132 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-12 | 106 | 130 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MPVPLAPYPT PPAPHTPPSA NGQQSQLVCS GCRNLLLYPV GASSVCCAVC NAVTAVPPPG 60 TEMAQLICGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGSCR MLLMYQYGAT 120 SVKCAVCNFV TSIGASTSIT EQKFSN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015959245.1 | 1e-101 | protein LOL1 isoform X2 | ||||
Refseq | XP_016174844.1 | 1e-101 | protein LOL1 isoform X2 | ||||
Refseq | XP_025627317.1 | 1e-101 | protein LOL1 isoform X2 | ||||
Refseq | XP_025699452.1 | 1e-101 | protein LOL1 isoform X2 | ||||
Swissprot | Q93ZB1 | 4e-78 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A445ESD9 | 1e-100 | A0A445ESD9_ARAHY; Uncharacterized protein | ||||
TrEMBL | N1NFU5 | 1e-100 | N1NFU5_ARADU; Putative LSD1 zinc finger domain protein | ||||
STRING | cassava4.1_018557m | 2e-88 | (Manihot esculenta) |
Publications ? help Back to Top | |||
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