PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy022744
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LSD
Protein Properties Length: 146aa    MW: 15186.7 Da    PI: 7.7401
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59538358PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1413.1e-132953125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C+gCr+lL YP GA+sV+Ca+C++V
  Ahy022744 29 CSGCRNLLLYPVGASSVCCAVCNAV 53
               ************************9 PP

2zf-LSD146.84.9e-156892125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y rGA+sV+C++C+tV
  Ahy022744 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
               ************************9 PP

3zf-LSD143.36e-14106130125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr lL+Y +GA+sV+Ca+C++V
  Ahy022744 106 CGSCRMLLMYQYGATSVKCAVCNFV 130
                ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.103.2E-419127No hitNo description
TIGRFAMsTIGR010537.4E-132656IPR005735Zinc finger, LSD1-type
SuperFamilySSF486955.16E-529127IPR011031Multihaem cytochrome
PfamPF069431.9E-102953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-146594IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.9E-13103132IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-12106130IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPHTPPSA NGQQSQLVCS GCRNLLLYPV GASSVCCAVC NAVTAVPPPG  60
TEMAQLICGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGSCR MLLMYQYGAT  120
SVKCAVCNFV TSIGASTSIT EQKFSN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015959245.11e-101protein LOL1 isoform X2
RefseqXP_016174844.11e-101protein LOL1 isoform X2
RefseqXP_025627317.11e-101protein LOL1 isoform X2
RefseqXP_025699452.11e-101protein LOL1 isoform X2
SwissprotQ93ZB14e-78LOL1_ARATH; Protein LOL1
TrEMBLA0A445ESD91e-100A0A445ESD9_ARAHY; Uncharacterized protein
TrEMBLN1NFU51e-100N1NFU5_ARADU; Putative LSD1 zinc finger domain protein
STRINGcassava4.1_018557m2e-88(Manihot esculenta)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]