PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy022620
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 433aa    MW: 49008.4 Da    PI: 5.7722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59542852PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07147168426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                + C +f++ G+C++G+ C ++H+
  Ahy022620 147 STCAYFLQ-GYCNRGSECLYSHS 168
                57******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.591143170IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4143169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5147168IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5147168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4148170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131171198IPR000571Zinc finger, CCCH-type
SMARTSM003560.81171197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
AEALMPKLEE DWCSLHNLSQ SSLHQTLEIY DDLLSSVHRL RPKFLSSFRG LPPYFDPYEY  60
EHTCLVTFQA DGDIDGVSAY EEGLKATGET KCASVPYVTS EEFHSYDVAK MFAKIIKEIR  120
AQFSEDTSSR EPGSADINNI NLNGGPSTCA YFLQGYCNRG SECLYSHSLQ AKRPQCKFFF  180
SLQGCRRGES CSYSHDSGPS ALSFRRDVCE PEDNNMAAAS LLRFFPQATN RSILVLDDTD  240
LHFATSLGRH YHPSKIIATT CLSETTILEQ SLKGVKILWG LYHPYQTIIA KAGKNPVPWN  300
EVQCVLWFPC FDSFGEDSDG QKQLLQNFFE YLAIRILADN LSDVKVIITI NNIRFSQLKA  360
EKLGRECFFV LTDSFAYDET SFGAILYDRL TPKTPTLVSR PTSYVFELHP PSKLLFGDYA  420
ANIRKNLYII QEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015951150.10.0DExH-box ATP-dependent RNA helicase DExH8
RefseqXP_025660429.10.0DExH-box ATP-dependent RNA helicase DExH8
TrEMBLA0A445E8A40.0A0A445E8A4_ARAHY; Uncharacterized protein
TrEMBLA0A445E8L40.0A0A445E8L4_ARAHY; Uncharacterized protein
STRINGAES617820.0(Medicago truncatula)