PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy022369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 883aa MW: 98064.9 Da PI: 5.4181 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.8e-24 | 110 | 211 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l+v Ahy022369 110 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTIQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLRV 206 99*********************999*****9555555.49************************************************..4577778** PP EEE-S CS B3 95 kvfrk 99 +v+r Ahy022369 207 GVRRV 211 **985 PP | |||||||
2 | Auxin_resp | 113.9 | 1.4e-37 | 236 | 319 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++ +F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+++ Ahy022369 236 AAHAASNRIPFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQ 319 79**********************************9********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.72E-47 | 98 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-41 | 103 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.29E-23 | 109 | 210 | No hit | No description |
SMART | SM01019 | 8.5E-25 | 110 | 212 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.872 | 110 | 212 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-21 | 110 | 211 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-32 | 236 | 319 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.7E-11 | 774 | 864 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.746 | 777 | 861 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.9E-8 | 781 | 856 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence Send to blast |
XLNSELWHAC AGPLVSLPQV GSLVYYFPQG HSEQVKIAAS TRRTATSQIP NYPNLPSQLL 60 CQVQNVTLHA DKDTDEIYAQ MSLQPLNSEK DVFPISDFGL KHSKHPTEFF CKTLTASDTS 120 THGGFSVPRR AAEKLFPPLD YTIQPPTQEL VVRDLHDNTW TFRHIYRGQP KRHLLTTGWS 180 LFVGSKRLRA GDSVLFIRDE KSQLRVGVRR VNRQQTTLPS SVLSADSMHI GVLAAAAHAA 240 SNRIPFTIFY NPRACPSEFV IPLAKYRKSV YGTQLSVGMR FGMMFETEES GKRRYMGTIV 300 GISDLDPLRW PGSKWRNIQV EWDEPGCGDK QNRVSVWEIE TPESLFIFPS LTSSLKRPLQ 360 SGFLENDWGA LIRRPYIRVP ENGATELANS MPNIYSEHLM KMLLKPQLIN NNGAMAMQQE 420 SVAMRGTLQD AKTTQAPENH KVNLASTENL PLKNLYSQSV PEQANVVNLH SQAKNDNHMS 480 SGTVIDKPKL EPEVLNDQMY EIPSAGTGTN IEKVASNPAN SQSVANQLAF LNQNQSHPLA 540 QSGSWPIQPQ LESSVSHPQL VDMPQGDSAI ANSMLPQLDI DEWMVYSSNQ TFANQNRSTG 600 PVSDFQEHSA ALQPQVVNPP MPMNQEVWDQ YVKNFKLLSQ VDQLTSVCQP GMYSLNGISS 660 SNNLRDLSAE SNNQSEICVD VSNSVNTTMV DPSTSSTILD EYCTLKERDF QNPQDCIVGN 720 LSSSQDVQSQ ITSASLTESH AFPLQDNSGG TSSSHVDFDE SSFLQNNSWQ PVAAPVRTYT 780 KVQKAGSVGR SIDVTTFKNY EELIRAIECM FGLDGLLNDT KGSGWKLVYV DYESDVLLVG 840 DDPWEEFVGC VRCIRILSPS EVQQMSEEGM KLLNSGALQG INV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 2 | 344 | 51 | 392 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015969856.2 | 0.0 | auxin response factor 5 isoform X1 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A445CJX1 | 0.0 | A0A445CJX1_ARAHY; Auxin response factor | ||||
STRING | GLYMA14G40540.1 | 0.0 | (Glycine max) |