PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy020947 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 21405.8 Da PI: 8.9686 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.00011 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Ahy020947 30 WKCDKCSKRYAVQSDWKAHSKTC 52 58*****************9998 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.001 | 60 | 78 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + Ahy020947 60 DCGTIFSRRDSFITHRAFC 78 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-5 | 18 | 51 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.53E-5 | 25 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
XCVHNHPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYKCD 60 CGTIFSRRDS FITHRAFCDA LAEETARVNA ASTINHTLLG ANNIAYTLMQ QQNHHPLVPN 120 NMSTHFSSIF KPISSSTTDE ISSNSQTSSR PLSLWNMGHH PHDTTTIMPI THNNLHDIHQ 180 QIGFATNPPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-38 | 26 | 95 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 4e-38 | 26 | 95 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016172121.1 | 1e-139 | zinc finger protein NUTCRACKER | ||||
TrEMBL | A0A444Y685 | 1e-137 | A0A444Y685_ARAHY; Uncharacterized protein | ||||
STRING | XP_004487192.1 | 3e-75 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 2e-60 | C2H2 family protein |