PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy020794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 109aa MW: 12421.1 Da PI: 9.6199 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed l+++ + +G+g +W + +r+ g++R++k+c++rw++yl Ahy020794 14 RGPWSPDEDATLKNYLHTHGTGgNWIALPRKAGLRRCGKSCRLRWLNYL 62 89**********************************************7 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 69 | 109 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 g +T++Ed+++ + +q+G++ W++Ia+ ++ gRt++++k++w Ahy020794 69 GGFTEQEDQIICTLYTQMGSR-WSAIASQLP-GRTDNDVKNYW 109 569******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.41 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.03E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 19.902 | 63 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-5 | 67 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-12 | 69 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 70 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.91E-9 | 71 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPD EDATLKNYLH THGTGGNWIA LPRKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEQEDQIIC TLYTQMGSRW SAIASQLPGR TDNDVKNYW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 14 | 109 | 7 | 100 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015945113.1 | 2e-79 | transcription factor RAX2-like | ||||
Swissprot | Q9M2Y9 | 1e-64 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A445GAQ1 | 2e-72 | A0A445GAQ1_GLYSO; Transcription factor RAX3 | ||||
TrEMBL | K7MNI7 | 2e-72 | K7MNI7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G35020.2 | 3e-73 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 2e-67 | myb domain protein 68 |
Publications ? help Back to Top | |||
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