PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy020589

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 600aa MW: 67391.8 Da PI: 5.4542

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59545925	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	284.5	2.9e-87	228	600	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyka.l.ppsetsekn.sseelaalklfsevsPilkfshlta 98 e Ll+cAe v +++ +a +lL++ + +s++g+p++R+++yf+eAL+ r+ ++ +++++ l ++++ ++++ +++ + ++ +f+ + P+ +++ +t Ahy020589 228 AESLLACAEKVGFKQFGRAGKLLSQCESSSSKTGSPVKRVVHYFAEALRLRIDLETGRISSKdLkKMQPMDPREiTKNLTPSVLAFYGAAPFCQITMFTL 327 578***********************************************996666665414344444444534444555566*********** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 q I e v +++++HiiDf+i +G+QW +L+q+L sR+ + l+iT+vgs s+sk +e tg+rL++fA +l++++ ++ +++ ++ +l+ + ++++ Ahy020589 328 VQSIIENVTEAKKIHIIDFEIRKGVQWTTLMQSLVSRNrCPLELLKITAVGS-GSNSKLIIEDTGKRLKDFAISLKINLCYDYVIVPDMLQLREDLFKID 426 **********************************445569****.66799************************************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 p+E+++V ++++l + +++ +le ++++vk+++P v+ ++e ea+hns+sF++rf+eal y+sa+fd+le+ + +++ +r + E ++l+ i+n+ Ahy020589 427 PEETIVVYSQYALGSKIQQPDQLET----IMRVVKTIRPSVLAITEIEASHNSTSFVNRFIEALFYFSAFFDCLENCMKHDEPNRLVFESQYLAYGIKNI 522 ********9999988888777....******************************************************************* PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +a+egaer++r+ + Wr+ ++++G+ ++++s qa+l+ ++++ + + + + +sl+lgWk+ pL s+S+W+ Ahy020589 523 LAAEGAERNARNVRIDVWRAFFSRFGLVEAEISMLSLFQAELVAKRFPcGSSCTFDRDGNSLLLGWKGTPLNSISVWK 600 ********************************************99999**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.922	201	579	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-84	228	600	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MENLSPFNEF GFSAIEDKHS SSNYTSWAIE GMNEVNKVQF SGAEEWGESM GIDPFGSSFE 60 FFPSQQQQQQ QLSYLEYGTL ESLQFVAVSP PPQTHTYFDD LHMFDENPTR MVPLSEETIA 120 NDKQQNSSTP LASLELLKSY GSNKGFKKLC DEEKIMQPID HSAAGNEVLG RKLSTDDVMR 180 IAGTRFIQSS PSSPKSLGSS ALKSIFSHPF GQFFSGLSGE EKEEVQLAES LLACAEKVGF 240 KQFGRAGKLL SQCESSSSKT GSPVKRVVHY FAEALRLRID LETGRISSKD LKKMQPMDPR 300 EITKNLTPSV LAFYGAAPFC QITMFTLVQS IIENVTEAKK IHIIDFEIRK GVQWTTLMQS 360 LVSRNRCPLE LLKITAVGSG SNSKLIIEDT GKRLKDFAIS LKINLCYDYV IVPDMLQLRE 420 DLFKIDPEET IVVYSQYALG SKIQQPDQLE TIMRVVKTIR PSVLAITEIE ASHNSTSFVN 480 RFIEALFYFS AFFDCLENCM KHDEPNRLVF ESQYLAYGIK NILAAEGAER NARNVRIDVW 540 RAFFSRFGLV EAEISMLSLF QAELVAKRFP CGSSCTFDRD GNSLLLGWKG TPLNSISVWK

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MENLSPFNEF GFSAIEDKHS SSNYTSWAIE GMNEVNKVQF SGAEEWGESM GIDPFGSSFE  60
FFPSQQQQQQ QLSYLEYGTL ESLQFVAVSP PPQTHTYFDD LHMFDENPTR MVPLSEETIA  120
NDKQQNSSTP LASLELLKSY GSNKGFKKLC DEEKIMQPID HSAAGNEVLG RKLSTDDVMR  180
IAGTRFIQSS PSSPKSLGSS ALKSIFSHPF GQFFSGLSGE EKEEVQLAES LLACAEKVGF  240
KQFGRAGKLL SQCESSSSKT GSPVKRVVHY FAEALRLRID LETGRISSKD LKKMQPMDPR  300
EITKNLTPSV LAFYGAAPFC QITMFTLVQS IIENVTEAKK IHIIDFEIRK GVQWTTLMQS  360
LVSRNRCPLE LLKITAVGSG SNSKLIIEDT GKRLKDFAIS LKINLCYDYV IVPDMLQLRE  420
DLFKIDPEET IVVYSQYALG SKIQQPDQLE TIMRVVKTIR PSVLAITEIE ASHNSTSFVN  480
RFIEALFYFS AFFDCLENCM KHDEPNRLVF ESQYLAYGIK NILAAEGAER NARNVRIDVW  540
RAFFSRFGLV EAEISMLSLF QAELVAKRFP CGSSCTFDRD GNSLLLGWKG TPLNSISVWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-40	229	600	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015959537.1	0.0	DELLA protein RGL3-like
Refseq	XP_025694512.1	0.0	DELLA protein RGL3
TrEMBL	A0A444WPN7	0.0	A0A444WPN7_ARAHY; Uncharacterized protein
STRING	XP_007147356.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	5e-51	RGA-like protein 3